Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Ift88Q61371 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.71■■□□□ 1.07
Ift88Q61371 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ift88Q61371 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.7■■□□□ 1.06
Ift88Q61371 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.7■■□□□ 1.06
Ift88Q61371 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Ift88Q61371 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Ift88Q61371 Etf1-202ENSMUST00000180351 108 ntBASIC21.7■■□□□ 1.06
Ift88Q61371 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ift88Q61371 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ift88Q61371 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ift88Q61371 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.69■■□□□ 1.06
Ift88Q61371 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Ift88Q61371 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ift88Q61371 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ift88Q61371 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Ift88Q61371 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Ift88Q61371 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Gm7417-201ENSMUST00000192950 473 ntBASIC21.68■■□□□ 1.06
Ift88Q61371 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.68■■□□□ 1.06
Ift88Q61371 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Ift88Q61371 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ift88Q61371 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ift88Q61371 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ift88Q61371 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ift88Q61371 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
Ift88Q61371 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ift88Q61371 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.66■■□□□ 1.06
Ift88Q61371 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.66■■□□□ 1.06
Ift88Q61371 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ift88Q61371 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
Ift88Q61371 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ift88Q61371 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ift88Q61371 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.65■■□□□ 1.06
Ift88Q61371 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ift88Q61371 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ift88Q61371 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ift88Q61371 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ift88Q61371 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Ift88Q61371 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Ift88Q61371 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ift88Q61371 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.62■■□□□ 1.05
Ift88Q61371 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Ift88Q61371 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ift88Q61371 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.61■■□□□ 1.05
Ift88Q61371 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms