Protein–RNA interactions for Protein: P28862

Mmp3, Stromelysin-1, mousemouse

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp3P28862 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp3P28862 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Mmp3P28862 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.16■□□□□ 0.98
Mmp3P28862 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Mmp3P28862 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Mmp3P28862 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.16■□□□□ 0.98
Mmp3P28862 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.16■□□□□ 0.98
Mmp3P28862 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.16■□□□□ 0.98
Mmp3P28862 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.16■□□□□ 0.98
Mmp3P28862 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.16■□□□□ 0.98
Mmp3P28862 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Mmp3P28862 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.15■□□□□ 0.98
Mmp3P28862 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.15■□□□□ 0.98
Mmp3P28862 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.15■□□□□ 0.98
Mmp3P28862 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
Mmp3P28862 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp3P28862 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Mmp3P28862 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Mmp3P28862 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Mmp3P28862 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.14■□□□□ 0.97
Mmp3P28862 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Mmp3P28862 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp3P28862 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.13■□□□□ 0.97
Mmp3P28862 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
Mmp3P28862 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp3P28862 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.12■□□□□ 0.97
Mmp3P28862 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.12■□□□□ 0.97
Mmp3P28862 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.12■□□□□ 0.97
Mmp3P28862 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Mmp3P28862 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp3P28862 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp3P28862 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp3P28862 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp3P28862 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Mmp3P28862 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Mmp3P28862 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Mmp3P28862 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.11■□□□□ 0.97
Mmp3P28862 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Mmp3P28862 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Mmp3P28862 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Mmp3P28862 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 AA386476-201ENSMUST00000098781 1665 ntBASIC21.1■□□□□ 0.97
Mmp3P28862 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC21.1■□□□□ 0.97
Mmp3P28862 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.1■□□□□ 0.97
Mmp3P28862 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.1■□□□□ 0.97
Mmp3P28862 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.1■□□□□ 0.97
Mmp3P28862 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp3P28862 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Mmp3P28862 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Mmp3P28862 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Mmp3P28862 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Mmp3P28862 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.09■□□□□ 0.97
Mmp3P28862 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.09■□□□□ 0.97
Mmp3P28862 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Mmp3P28862 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Mmp3P28862 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.09■□□□□ 0.97
Mmp3P28862 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Mmp3P28862 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.08■□□□□ 0.97
Mmp3P28862 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Mmp3P28862 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Mmp3P28862 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Mmp3P28862 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Mmp3P28862 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.08■□□□□ 0.97
Mmp3P28862 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Mmp3P28862 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Mmp3P28862 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Mmp3P28862 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Mmp3P28862 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Mmp3P28862 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Mmp3P28862 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Mmp3P28862 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.07■□□□□ 0.96
Mmp3P28862 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Mmp3P28862 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Mmp3P28862 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.07■□□□□ 0.96
Mmp3P28862 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.07■□□□□ 0.96
Mmp3P28862 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Mmp3P28862 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Mmp3P28862 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms