Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Cdx1P18111 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC15.71■□□□□ 0.11
Cdx1P18111 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Cdx1P18111 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Cdx1P18111 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Cdx1P18111 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Cdx1P18111 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC15.7■□□□□ 0.1
Cdx1P18111 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Cdx1P18111 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdx1P18111 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Cdx1P18111 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.69■□□□□ 0.1
Cdx1P18111 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC15.69■□□□□ 0.1
Cdx1P18111 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Cdx1P18111 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx1P18111 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx1P18111 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx1P18111 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Cdx1P18111 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx1P18111 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Cdx1P18111 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx1P18111 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Cdx1P18111 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx1P18111 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.67■□□□□ 0.1
Cdx1P18111 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx1P18111 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC15.67■□□□□ 0.1
Cdx1P18111 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC15.67■□□□□ 0.1
Cdx1P18111 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC15.67■□□□□ 0.1
Cdx1P18111 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx1P18111 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC15.66■□□□□ 0.1
Cdx1P18111 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC15.66■□□□□ 0.1
Cdx1P18111 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Cdx1P18111 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx1P18111 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Cdx1P18111 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC15.65■□□□□ 0.1
Cdx1P18111 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Cdx1P18111 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC15.65■□□□□ 0.1
Cdx1P18111 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx1P18111 Gm44949-201ENSMUST00000206423 1450 ntBASIC15.65■□□□□ 0.1
Cdx1P18111 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC15.65■□□□□ 0.1
Cdx1P18111 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Cdx1P18111 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Cdx1P18111 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC15.64■□□□□ 0.09
Cdx1P18111 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC15.64■□□□□ 0.09
Cdx1P18111 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC15.64■□□□□ 0.09
Cdx1P18111 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Cdx1P18111 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC15.64■□□□□ 0.09
Cdx1P18111 Gm7417-201ENSMUST00000192950 473 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms