Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RaraP11416 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
RaraP11416 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RaraP11416 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RaraP11416 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.23■□□□□ 0.99
RaraP11416 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
RaraP11416 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RaraP11416 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
RaraP11416 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.22■□□□□ 0.99
RaraP11416 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.22■□□□□ 0.99
RaraP11416 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RaraP11416 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.21■□□□□ 0.99
RaraP11416 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.21■□□□□ 0.99
RaraP11416 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
RaraP11416 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.21■□□□□ 0.99
RaraP11416 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RaraP11416 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
RaraP11416 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RaraP11416 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
RaraP11416 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RaraP11416 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RaraP11416 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RaraP11416 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RaraP11416 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.2■□□□□ 0.98
RaraP11416 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.2■□□□□ 0.98
RaraP11416 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RaraP11416 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.2■□□□□ 0.98
RaraP11416 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.19■□□□□ 0.98
RaraP11416 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.19■□□□□ 0.98
RaraP11416 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RaraP11416 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.18■□□□□ 0.98
RaraP11416 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RaraP11416 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.18■□□□□ 0.98
RaraP11416 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.18■□□□□ 0.98
RaraP11416 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RaraP11416 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RaraP11416 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RaraP11416 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RaraP11416 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RaraP11416 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RaraP11416 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RaraP11416 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.16■□□□□ 0.98
RaraP11416 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RaraP11416 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RaraP11416 Gm14117-201ENSMUST00000122417 843 ntBASIC21.15■□□□□ 0.98
RaraP11416 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.15■□□□□ 0.98
RaraP11416 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RaraP11416 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RaraP11416 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms