Protein–RNA interactions for Protein: O88543

Cops3, COP9 signalosome complex subunit 3, mousemouse

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops3O88543 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cops3O88543 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Cops3O88543 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Cops3O88543 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cops3O88543 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cops3O88543 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.39
Cops3O88543 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Cops3O88543 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Mir6236-201ENSMUST00000184437 123 ntBASIC17.51■□□□□ 0.39
Cops3O88543 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC17.51■□□□□ 0.39
Cops3O88543 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.51■□□□□ 0.39
Cops3O88543 Gm18755-201ENSMUST00000218030 1099 ntBASIC17.51■□□□□ 0.39
Cops3O88543 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cops3O88543 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Cops3O88543 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
Cops3O88543 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cops3O88543 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cops3O88543 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC17.5■□□□□ 0.39
Cops3O88543 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC17.5■□□□□ 0.39
Cops3O88543 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cops3O88543 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Cops3O88543 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cops3O88543 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.49■□□□□ 0.39
Cops3O88543 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Cops3O88543 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cops3O88543 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Cops3O88543 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cops3O88543 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cops3O88543 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
Cops3O88543 Gm43530-201ENSMUST00000195920 274 ntBASIC17.48■□□□□ 0.39
Cops3O88543 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Cops3O88543 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cops3O88543 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cops3O88543 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cops3O88543 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.47■□□□□ 0.39
Cops3O88543 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Cops3O88543 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cops3O88543 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.47■□□□□ 0.39
Cops3O88543 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Gm9870-201ENSMUST00000063874 645 ntBASIC17.47■□□□□ 0.39
Cops3O88543 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.47■□□□□ 0.39
Cops3O88543 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Cops3O88543 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cops3O88543 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Cops3O88543 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Cops3O88543 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.46■□□□□ 0.39
Cops3O88543 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.46■□□□□ 0.39
Cops3O88543 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Cops3O88543 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cops3O88543 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.46■□□□□ 0.39
Cops3O88543 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Cops3O88543 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Cops3O88543 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC17.45■□□□□ 0.38
Cops3O88543 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Cops3O88543 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Cops3O88543 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cops3O88543 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cops3O88543 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms