Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Hmgb3O54879 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.3■□□□□ 0.2
Hmgb3O54879 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.3■□□□□ 0.2
Hmgb3O54879 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 AC116713.1-201ENSMUST00000215074 430 ntBASIC16.29■□□□□ 0.2
Hmgb3O54879 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb3O54879 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb3O54879 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb3O54879 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb3O54879 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC16.28■□□□□ 0.2
Hmgb3O54879 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb3O54879 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb3O54879 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb3O54879 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.27■□□□□ 0.2
Hmgb3O54879 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.27■□□□□ 0.2
Hmgb3O54879 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb3O54879 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgb3O54879 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgb3O54879 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgb3O54879 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgb3O54879 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgb3O54879 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Hmgb3O54879 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.26■□□□□ 0.19
Hmgb3O54879 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC16.26■□□□□ 0.19
Hmgb3O54879 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Hmgb3O54879 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgb3O54879 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Hmgb3O54879 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Hmgb3O54879 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgb3O54879 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Hmgb3O54879 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC16.24■□□□□ 0.19
Hmgb3O54879 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Hmgb3O54879 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb3O54879 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb3O54879 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb3O54879 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Hmgb3O54879 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb3O54879 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Hmgb3O54879 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms