Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nr1i3O35627 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.13■□□□□ 0.97
Nr1i3O35627 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1i3O35627 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1i3O35627 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.13■□□□□ 0.97
Nr1i3O35627 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.13■□□□□ 0.97
Nr1i3O35627 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Nr1i3O35627 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Nr1i3O35627 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Nr1i3O35627 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nr1i3O35627 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Nr1i3O35627 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nr1i3O35627 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.1■□□□□ 0.97
Nr1i3O35627 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1i3O35627 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nr1i3O35627 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
Nr1i3O35627 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Nr1i3O35627 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nr1i3O35627 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nr1i3O35627 Rps24-207ENSMUST00000224568 714 ntBASIC21.08■□□□□ 0.97
Nr1i3O35627 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Nr1i3O35627 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.08■□□□□ 0.96
Nr1i3O35627 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
Nr1i3O35627 Gm14117-201ENSMUST00000122417 843 ntBASIC21.07■□□□□ 0.96
Nr1i3O35627 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.07■□□□□ 0.96
Nr1i3O35627 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
Nr1i3O35627 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nr1i3O35627 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Nr1i3O35627 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Nr1i3O35627 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Nr1i3O35627 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nr1i3O35627 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.05■□□□□ 0.96
Nr1i3O35627 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Nr1i3O35627 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nr1i3O35627 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1i3O35627 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1i3O35627 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1i3O35627 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.04■□□□□ 0.96
Nr1i3O35627 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.04■□□□□ 0.96
Nr1i3O35627 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1i3O35627 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nr1i3O35627 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Nr1i3O35627 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.03■□□□□ 0.96
Nr1i3O35627 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nr1i3O35627 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1i3O35627 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
Nr1i3O35627 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1i3O35627 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nr1i3O35627 Gm12922-201ENSMUST00000120626 809 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms