Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lima1Q9ERG0 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lima1Q9ERG0 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lima1Q9ERG0 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lima1Q9ERG0 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lima1Q9ERG0 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Lima1Q9ERG0 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lima1Q9ERG0 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lima1Q9ERG0 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lima1Q9ERG0 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lima1Q9ERG0 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Lima1Q9ERG0 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lima1Q9ERG0 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lima1Q9ERG0 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Lima1Q9ERG0 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms