Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 KRT18P61-201ENST00000585825 1298 ntBASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 AC105233.4-201ENST00000642045 216 ntBASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USHBP1Q8N6Y0 LINC02228-203ENST00000641970 1355 ntBASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 AP005435.1-201ENST00000529293 1178 ntBASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.52■■■□□ 2.32
USHBP1Q8N6Y0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC29.51■■■□□ 2.31
USHBP1Q8N6Y0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC29.51■■■□□ 2.31
USHBP1Q8N6Y0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.51■■■□□ 2.31
USHBP1Q8N6Y0 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC29.51■■■□□ 2.31
USHBP1Q8N6Y0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
USHBP1Q8N6Y0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC29.5■■■□□ 2.31
USHBP1Q8N6Y0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
USHBP1Q8N6Y0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 AC004812.2-201ENST00000611079 2094 ntBASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 AC079630.1-202ENST00000618127 1840 ntBASIC29.48■■■□□ 2.31
USHBP1Q8N6Y0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 LINC01124-201ENST00000409786 2117 ntBASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 SHD-204ENST00000599689 1729 ntTSL 5 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
USHBP1Q8N6Y0 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC29.46■■■□□ 2.31
USHBP1Q8N6Y0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC29.46■■■□□ 2.31
USHBP1Q8N6Y0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
USHBP1Q8N6Y0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
USHBP1Q8N6Y0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
USHBP1Q8N6Y0 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
USHBP1Q8N6Y0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.31
USHBP1Q8N6Y0 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
USHBP1Q8N6Y0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.45■■■□□ 2.3
USHBP1Q8N6Y0 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
USHBP1Q8N6Y0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 RARA-203ENST00000394086 2008 ntTSL 2 BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 AC004687.1-201ENST00000579003 1625 ntBASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
USHBP1Q8N6Y0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC29.43■■■□□ 2.3
USHBP1Q8N6Y0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC29.42■■■□□ 2.3
USHBP1Q8N6Y0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
USHBP1Q8N6Y0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC29.41■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms