Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav8d-1Q5R1H8 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trav8d-1Q5R1H8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Trav8d-1Q5R1H8 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav8d-1Q5R1H8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav8d-1Q5R1H8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav8d-1Q5R1H8 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav8d-1Q5R1H8 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav8d-1Q5R1H8 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav8d-1Q5R1H8 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav8d-1Q5R1H8 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav8d-1Q5R1H8 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav8d-1Q5R1H8 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav8d-1Q5R1H8 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Trav8d-1Q5R1H8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Trav8d-1Q5R1H8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav8d-1Q5R1H8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav8d-1Q5R1H8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav8d-1Q5R1H8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.02■□□□□ 0.15
Trav8d-1Q5R1H8 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav8d-1Q5R1H8 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav8d-1Q5R1H8 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav8d-1Q5R1H8 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav8d-1Q5R1H8 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC16.01■□□□□ 0.15
Trav8d-1Q5R1H8 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms