Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3bQ3ULL6 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Mir7075-201ENSMUST00000184187 82 ntBASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Gm45417-201ENSMUST00000209533 758 ntBASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3bQ3ULL6 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3bQ3ULL6 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Spcs1-204ENSMUST00000226782 949 ntBASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3bQ3ULL6 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Upf3bQ3ULL6 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Upf3bQ3ULL6 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Upf3bQ3ULL6 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3bQ3ULL6 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Gm34220-201ENSMUST00000223001 2709 ntBASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3bQ3ULL6 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Gm12251-201ENSMUST00000117893 792 ntBASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3bQ3ULL6 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.04■□□□□ 0.96
Upf3bQ3ULL6 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3bQ3ULL6 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms