Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Ptchd3Q0EEE2 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Gm42501-201ENSMUST00000200220 1026 ntBASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ptchd3Q0EEE2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Ptchd3Q0EEE2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ptchd3Q0EEE2 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ptchd3Q0EEE2 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Gm40881-201ENSMUST00000223397 166 ntBASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ptchd3Q0EEE2 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ptchd3Q0EEE2 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ptchd3Q0EEE2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ptchd3Q0EEE2 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ptchd3Q0EEE2 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ptchd3Q0EEE2 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ptchd3Q0EEE2 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ptchd3Q0EEE2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ptchd3Q0EEE2 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ptchd3Q0EEE2 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms