Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Nkx3-1P97436 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.08■□□□□ 0.32
Nkx3-1P97436 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx3-1P97436 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx3-1P97436 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.08■□□□□ 0.32
Nkx3-1P97436 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nkx3-1P97436 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nkx3-1P97436 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.06■□□□□ 0.32
Nkx3-1P97436 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nkx3-1P97436 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.05■□□□□ 0.32
Nkx3-1P97436 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nkx3-1P97436 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Nkx3-1P97436 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.03■□□□□ 0.32
Nkx3-1P97436 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Nkx3-1P97436 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.02■□□□□ 0.32
Nkx3-1P97436 AC112142.1-201ENSMUST00000228796 918 ntBASIC17.02■□□□□ 0.32
Nkx3-1P97436 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
Nkx3-1P97436 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Nkx3-1P97436 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Nkx3-1P97436 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Nkx3-1P97436 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Nkx3-1P97436 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Nkx3-1P97436 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Gm13234-201ENSMUST00000120010 747 ntBASIC17.01■□□□□ 0.31
Nkx3-1P97436 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.01■□□□□ 0.31
Nkx3-1P97436 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Nkx3-1P97436 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Nkx3-1P97436 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Nkx3-1P97436 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17■□□□□ 0.31
Nkx3-1P97436 Gm27801-201ENSMUST00000184174 223 ntBASIC17■□□□□ 0.31
Nkx3-1P97436 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17■□□□□ 0.31
Nkx3-1P97436 Reep4-203ENSMUST00000226563 1444 ntBASIC17■□□□□ 0.31
Nkx3-1P97436 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Nkx3-1P97436 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Nkx3-1P97436 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms