Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mllt10-201ENSMUST00000028076 4917 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Txk-201ENSMUST00000113604 2260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Acox2-204ENSMUST00000164598 2907 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Tmem126b-201ENSMUST00000032843 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Fam90a1b-201ENSMUST00000044989 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Traf1P39428 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Traf1P39428 4930451G09Rik-201ENSMUST00000090457 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Cpvl-201ENSMUST00000166545 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Traf1P39428 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Platr4-203ENSMUST00000199155 2161 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Slc39a14-210ENSMUST00000152067 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Atp5s-201ENSMUST00000021372 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Diablo-207ENSMUST00000145152 2588 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Slco5a1-201ENSMUST00000115402 3690 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Lrtm1-203ENSMUST00000224760 3060 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Ttll5-205ENSMUST00000110224 4647 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Pex13-ps-201ENSMUST00000118184 1157 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Gm11824-201ENSMUST00000120191 846 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Gm14639-201ENSMUST00000120850 866 ntBASIC11.96□□□□□ -0.49
Traf1P39428 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Gm20455-201ENSMUST00000174100 1138 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC11.96□□□□□ -0.49
Traf1P39428 Gm17799-201ENSMUST00000183270 667 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Gm18443-201ENSMUST00000185358 556 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Gm8226-201ENSMUST00000190511 798 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Gm42208-201ENSMUST00000198215 670 ntTSL 3 BASIC11.96□□□□□ -0.49
Traf1P39428 Gm43610-201ENSMUST00000199117 365 ntBASIC11.96□□□□□ -0.49
Traf1P39428 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC11.96□□□□□ -0.49
Traf1P39428 Gm8083-201ENSMUST00000203976 475 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Gm3791-201ENSMUST00000220790 768 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Cma1-202ENSMUST00000226280 1090 ntAPPRIS ALT2 BASIC11.96□□□□□ -0.49
Traf1P39428 AC154477.1-201ENSMUST00000226515 773 ntBASIC11.96□□□□□ -0.49
Traf1P39428 AC137842.2-201ENSMUST00000227734 797 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Cma1-201ENSMUST00000022834 1074 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Eif3m-201ENSMUST00000028592 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Traf1P39428 Tbata-202ENSMUST00000079235 696 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Traf1P39428 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Traf1P39428 Gm4778-201ENSMUST00000098878 1098 ntBASIC11.96□□□□□ -0.49
Traf1P39428 Ncmap-203ENSMUST00000105858 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Galntl5-201ENSMUST00000030778 1627 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Gm32511-202ENSMUST00000217021 2069 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Gm28268-201ENSMUST00000188966 2528 ntTSL 5 BASIC11.96□□□□□ -0.5
Traf1P39428 2010111I01Rik-201ENSMUST00000021911 2979 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Traf1P39428 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Hmg20a-206ENSMUST00000217518 2468 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Foxm1-201ENSMUST00000073316 4652 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Traf1P39428 Pigo-202ENSMUST00000098109 4239 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Capn8-201ENSMUST00000048941 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Ttpal-207ENSMUST00000171696 4522 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Traf1P39428 Chd1-201ENSMUST00000024620 3196 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Marveld2-201ENSMUST00000022137 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Fkbp6-201ENSMUST00000044972 1447 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Pcdh20-202ENSMUST00000192557 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Gm44103-201ENSMUST00000204364 3662 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Fcgr3-204ENSMUST00000169017 1324 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Ighv8-6-201ENSMUST00000103524 301 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Traf1P39428 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Lyrm1-204ENSMUST00000106518 875 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Traf1P39428 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Traf1P39428 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Gm14997-201ENSMUST00000119232 636 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Gm14176-201ENSMUST00000121302 477 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Aif1l-207ENSMUST00000148056 670 ntTSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Gm17782-201ENSMUST00000174345 880 ntBASIC11.95□□□□□ -0.5
Traf1P39428 1700113A16Rik-203ENSMUST00000200006 563 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC11.95□□□□□ -0.5
Traf1P39428 Gm18164-201ENSMUST00000213769 927 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Gm18166-201ENSMUST00000215557 927 ntBASIC11.95□□□□□ -0.5
Traf1P39428 AC117769.1-201ENSMUST00000224716 1120 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Ndufc1-201ENSMUST00000038108 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Gm26440-201ENSMUST00000082591 129 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Gm10617-201ENSMUST00000098368 1172 ntBASIC11.95□□□□□ -0.5
Traf1P39428 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Traf1P39428 Ptpre-208ENSMUST00000211788 2331 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Traf1P39428 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 82 ms