Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.97■□□□□ 0.47
Col6a6Q8C6K9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.96■□□□□ 0.47
Col6a6Q8C6K9 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Col6a6Q8C6K9 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col6a6Q8C6K9 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a6Q8C6K9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
Col6a6Q8C6K9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a6Q8C6K9 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col6a6Q8C6K9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.93■□□□□ 0.46
Col6a6Q8C6K9 Gm7290-201ENSMUST00000104990 617 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Gm12918-201ENSMUST00000120234 636 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Gm15710-201ENSMUST00000121821 636 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Gm5075-201ENSMUST00000196916 622 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Gm6365-201ENSMUST00000054711 744 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col6a6Q8C6K9 Gm43403-201ENSMUST00000198011 1786 ntBASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col6a6Q8C6K9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Gm10252-201ENSMUST00000209541 832 ntBASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col6a6Q8C6K9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
Col6a6Q8C6K9 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Col6a6Q8C6K9 Mir7071-201ENSMUST00000184847 69 ntBASIC17.89■□□□□ 0.46
Col6a6Q8C6K9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col6a6Q8C6K9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col6a6Q8C6K9 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col6a6Q8C6K9 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col6a6Q8C6K9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Col6a6Q8C6K9 Gm6211-202ENSMUST00000167849 925 ntBASIC17.89■□□□□ 0.45
Col6a6Q8C6K9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms