Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx3P48381 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx3P48381 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Rfx3P48381 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Rfx3P48381 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Rfx3P48381 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rfx3P48381 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Rfx3P48381 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC17.83■□□□□ 0.45
Rfx3P48381 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rfx3P48381 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx3P48381 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx3P48381 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC17.83■□□□□ 0.44
Rfx3P48381 Etf1-202ENSMUST00000180351 108 ntBASIC17.83■□□□□ 0.44
Rfx3P48381 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.83■□□□□ 0.44
Rfx3P48381 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx3P48381 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rfx3P48381 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.82■□□□□ 0.44
Rfx3P48381 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Rfx3P48381 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Rfx3P48381 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rfx3P48381 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.81■□□□□ 0.44
Rfx3P48381 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.81■□□□□ 0.44
Rfx3P48381 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.81■□□□□ 0.44
Rfx3P48381 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.81■□□□□ 0.44
Rfx3P48381 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.81■□□□□ 0.44
Rfx3P48381 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.81■□□□□ 0.44
Rfx3P48381 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rfx3P48381 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx3P48381 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx3P48381 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.8■□□□□ 0.44
Rfx3P48381 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.8■□□□□ 0.44
Rfx3P48381 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx3P48381 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Rfx3P48381 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.8■□□□□ 0.44
Rfx3P48381 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rfx3P48381 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.79■□□□□ 0.44
Rfx3P48381 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx3P48381 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx3P48381 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx3P48381 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx3P48381 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rfx3P48381 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.79■□□□□ 0.44
Rfx3P48381 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Rfx3P48381 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC17.78■□□□□ 0.44
Rfx3P48381 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rfx3P48381 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.77■□□□□ 0.44
Rfx3P48381 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.77■□□□□ 0.44
Rfx3P48381 Gm9959-201ENSMUST00000068277 390 ntBASIC17.77■□□□□ 0.44
Rfx3P48381 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Rfx3P48381 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Rfx3P48381 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rfx3P48381 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms