Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp4P35123 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
Usp4P35123 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp4P35123 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp4P35123 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Usp4P35123 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.72■□□□□ 0.91
Usp4P35123 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp4P35123 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp4P35123 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp4P35123 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp4P35123 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp4P35123 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Usp4P35123 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Usp4P35123 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.7■□□□□ 0.9
Usp4P35123 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.7■□□□□ 0.9
Usp4P35123 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.7■□□□□ 0.9
Usp4P35123 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Usp4P35123 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp4P35123 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Usp4P35123 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.69■□□□□ 0.9
Usp4P35123 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp4P35123 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Usp4P35123 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.68■□□□□ 0.9
Usp4P35123 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Usp4P35123 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp4P35123 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp4P35123 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp4P35123 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.66■□□□□ 0.9
Usp4P35123 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.66■□□□□ 0.9
Usp4P35123 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.66■□□□□ 0.9
Usp4P35123 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.66■□□□□ 0.9
Usp4P35123 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp4P35123 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp4P35123 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp4P35123 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp4P35123 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
Usp4P35123 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp4P35123 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Usp4P35123 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp4P35123 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp4P35123 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp4P35123 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.64■□□□□ 0.89
Usp4P35123 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp4P35123 Gm13241-201ENSMUST00000094493 780 ntBASIC20.64■□□□□ 0.89
Usp4P35123 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Gm40881-201ENSMUST00000223397 166 ntBASIC20.63■□□□□ 0.89
Usp4P35123 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp4P35123 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.62■□□□□ 0.89
Usp4P35123 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC20.62■□□□□ 0.89
Usp4P35123 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp4P35123 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp4P35123 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms