Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm11957-201ENSMUST00000118304 779 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm9372-201ENSMUST00000168454 430 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm9162-201ENSMUST00000182081 991 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Mir7035-201ENSMUST00000184713 82 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 AC122024.3-201ENSMUST00000217719 294 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Rnft2-201ENSMUST00000117177 4381 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Acss3-203ENSMUST00000165067 4696 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Morf4l2-212ENSMUST00000164609 1811 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm5403-201ENSMUST00000117105 2795 ntBASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Herc6-201ENSMUST00000031817 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Gm42031-201ENSMUST00000209823 1885 ntTSL 5 BASIC11.83□□□□□ -0.52
Smc1aQ9CU62 Dctn1-202ENSMUST00000113907 4205 ntTSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Dusp11-201ENSMUST00000032071 6435 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 5730460C07Rik-201ENSMUST00000081193 1834 ntTSL 2 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Aoc1-201ENSMUST00000031835 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 C230021G24Rik-201ENSMUST00000181196 3679 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm25343-201ENSMUST00000157460 107 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Pcdhga1-201ENSMUST00000194190 4692 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Trav11n-201ENSMUST00000200113 343 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm4903-201ENSMUST00000210462 405 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Rrm2b-201ENSMUST00000022901 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 AC108416.1-201ENSMUST00000228755 1558 ntBASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Echdc1-201ENSMUST00000020034 3856 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Copb1-201ENSMUST00000033012 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Gramd1b-212ENSMUST00000165104 3824 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Hcar2-201ENSMUST00000057145 1930 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Smc1aQ9CU62 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm15631-201ENSMUST00000142962 2436 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm33914-201ENSMUST00000214108 2150 ntTSL 5 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Dcun1d2-202ENSMUST00000110838 2955 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm15617-201ENSMUST00000118973 771 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm13981-201ENSMUST00000122360 447 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm12906-201ENSMUST00000154610 441 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm5342-201ENSMUST00000181982 1003 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm43969-201ENSMUST00000204833 535 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 Gm45135-201ENSMUST00000206787 1184 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 AC162932.1-201ENSMUST00000219209 872 ntBASIC11.81□□□□□ -0.52
Smc1aQ9CU62 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms