Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm11996-201ENSMUST00000117538 915 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm11573-201ENSMUST00000119956 394 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm18801-201ENSMUST00000186616 536 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm29067-201ENSMUST00000190821 470 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm8255-201ENSMUST00000218693 305 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm8181-201ENSMUST00000062242 669 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Vmn1r38-202ENSMUST00000227493 3486 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gosr2-201ENSMUST00000021329 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Ankrd11-201ENSMUST00000098333 7995 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Ilf3-202ENSMUST00000115414 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Tubgcp5-205ENSMUST00000205796 3448 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 5730596B20Rik-201ENSMUST00000070587 3354 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Tmem126b-201ENSMUST00000032843 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 AC122382.1-201ENSMUST00000225869 2371 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Bsdc1-201ENSMUST00000048162 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm6024-201ENSMUST00000117850 1558 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm14497-201ENSMUST00000119537 580 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm12129-201ENSMUST00000120104 1147 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Nrbp2-201ENSMUST00000019516 2495 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm9369-201ENSMUST00000196009 733 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm42779-201ENSMUST00000198807 406 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Gm29763-201ENSMUST00000205306 616 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 AC134248.1-201ENSMUST00000216113 1176 ntBASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Actn2-201ENSMUST00000064204 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Rbp1-201ENSMUST00000052068 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Sap18-204ENSMUST00000128764 5125 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Smc1aQ9CU62 Cxcr2-201ENSMUST00000027372 2220 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
Smc1aQ9CU62 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Smc1aQ9CU62 Slco5a1-202ENSMUST00000115403 8509 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.51
Smc1aQ9CU62 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Smc1aQ9CU62 Rnf20-201ENSMUST00000029989 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Cfap54-201ENSMUST00000020200 2473 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Ddr1-203ENSMUST00000117301 3874 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Zfp780b-201ENSMUST00000081618 3004 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Dmtn-203ENSMUST00000110984 4176 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Sp100-201ENSMUST00000054279 1978 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm45416-201ENSMUST00000209713 2201 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 AC154528.2-201ENSMUST00000228432 3023 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm6158-201ENSMUST00000109467 904 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm13019-201ENSMUST00000120000 276 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm17221-201ENSMUST00000163909 481 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm17073-201ENSMUST00000168069 556 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm26976-201ENSMUST00000182929 908 ntBASIC11.89□□□□□ -0.51
Smc1aQ9CU62 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms