Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm12986-201ENSMUST00000119037 967 ntBASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Wnk1-224ENSMUST00000203030 8163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Id2-203ENSMUST00000222667 958 ntBASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 AC115304.2-201ENSMUST00000226399 332 ntBASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Bsnd-201ENSMUST00000054472 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Nrap-205ENSMUST00000167239 4752 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Timd2-202ENSMUST00000109225 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
Vps53Q8CCB4 Gm34923-201ENSMUST00000222673 5043 ntTSL 5 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Setd7-201ENSMUST00000037141 7411 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Cnppd1-202ENSMUST00000168720 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Morf4l2-212ENSMUST00000164609 1811 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Slc35b4-201ENSMUST00000019143 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm22937-201ENSMUST00000103954 131 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm11993-201ENSMUST00000121861 820 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Mir7035-201ENSMUST00000184713 82 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm7255-201ENSMUST00000187371 908 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Igkv2-116-201ENSMUST00000199327 362 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm14005-208ENSMUST00000223654 681 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Nwd1-201ENSMUST00000093427 7840 ntTSL 5 BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm38344-201ENSMUST00000195306 1353 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Adgra1-201ENSMUST00000026548 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Gm6768-201ENSMUST00000022467 1878 ntBASIC12.4□□□□□ -0.42
Vps53Q8CCB4 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Ccdc136-201ENSMUST00000096084 3826 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm23745-201ENSMUST00000104230 125 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm5555-201ENSMUST00000120352 1111 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm12136-201ENSMUST00000120460 1209 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm14052-201ENSMUST00000121434 1031 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm25343-201ENSMUST00000157460 107 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Snord55-201ENSMUST00000174939 79 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm24328-201ENSMUST00000175104 67 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm43547-201ENSMUST00000197729 328 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 AC154436.1-201ENSMUST00000227272 782 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 CT030652.1-201ENSMUST00000227377 1235 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Lss-201ENSMUST00000048678 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm9791-201ENSMUST00000060997 447 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Plekha6-201ENSMUST00000038295 7388 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Gm5308-201ENSMUST00000196752 1354 ntBASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps53Q8CCB4 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms