Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shroom3Q9QXN0 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Shroom3Q9QXN0 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.16■□□□□ 0.82
Shroom3Q9QXN0 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shroom3Q9QXN0 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shroom3Q9QXN0 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Gm43017-201ENSMUST00000198296 752 ntBASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC20.15■□□□□ 0.82
Shroom3Q9QXN0 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.82
Shroom3Q9QXN0 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.14■□□□□ 0.81
Shroom3Q9QXN0 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Shroom3Q9QXN0 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Shroom3Q9QXN0 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.13■□□□□ 0.81
Shroom3Q9QXN0 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shroom3Q9QXN0 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shroom3Q9QXN0 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.11■□□□□ 0.81
Shroom3Q9QXN0 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Shroom3Q9QXN0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shroom3Q9QXN0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Shroom3Q9QXN0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shroom3Q9QXN0 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Shroom3Q9QXN0 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Shroom3Q9QXN0 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shroom3Q9QXN0 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shroom3Q9QXN0 Gm12251-201ENSMUST00000117893 792 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms