Protein–RNA interactions for Protein: Q5M6W3

Clhc1, Clathrin heavy chain linker domain-containing protein 1, mousemouse

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clhc1Q5M6W3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clhc1Q5M6W3 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clhc1Q5M6W3 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clhc1Q5M6W3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clhc1Q5M6W3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clhc1Q5M6W3 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Clhc1Q5M6W3 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.2■□□□□ 0.66
Clhc1Q5M6W3 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Gm43566-201ENSMUST00000196851 808 ntBASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clhc1Q5M6W3 Gm13238-201ENSMUST00000117655 780 ntBASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clhc1Q5M6W3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Clhc1Q5M6W3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clhc1Q5M6W3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clhc1Q5M6W3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Clhc1Q5M6W3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Clhc1Q5M6W3 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.14■□□□□ 0.66
Clhc1Q5M6W3 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clhc1Q5M6W3 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Clhc1Q5M6W3 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms