Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col6a6Q8C6K9 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Col6a6Q8C6K9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Col6a6Q8C6K9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Col6a6Q8C6K9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Col6a6Q8C6K9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Col6a6Q8C6K9 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC24.4■■□□□ 1.5
Col6a6Q8C6K9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Col6a6Q8C6K9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Col6a6Q8C6K9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Col6a6Q8C6K9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Col6a6Q8C6K9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col6a6Q8C6K9 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC24.31■■□□□ 1.48
Col6a6Q8C6K9 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col6a6Q8C6K9 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col6a6Q8C6K9 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col6a6Q8C6K9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col6a6Q8C6K9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col6a6Q8C6K9 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Col6a6Q8C6K9 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col6a6Q8C6K9 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
Col6a6Q8C6K9 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC24.23■■□□□ 1.47
Col6a6Q8C6K9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.23■■□□□ 1.47
Col6a6Q8C6K9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
Col6a6Q8C6K9 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col6a6Q8C6K9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Col6a6Q8C6K9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Col6a6Q8C6K9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Col6a6Q8C6K9 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.21■■□□□ 1.47
Col6a6Q8C6K9 Gm9397-201ENSMUST00000200125 605 ntBASIC24.21■■□□□ 1.47
Col6a6Q8C6K9 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Col6a6Q8C6K9 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.2■■□□□ 1.46
Col6a6Q8C6K9 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Col6a6Q8C6K9 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Col6a6Q8C6K9 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col6a6Q8C6K9 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.18■■□□□ 1.46
Col6a6Q8C6K9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col6a6Q8C6K9 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Col6a6Q8C6K9 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Col6a6Q8C6K9 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col6a6Q8C6K9 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col6a6Q8C6K9 Mipep-204ENSMUST00000225043 1548 ntBASIC24.15■■□□□ 1.46
Col6a6Q8C6K9 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Col6a6Q8C6K9 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.14■■□□□ 1.46
Col6a6Q8C6K9 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col6a6Q8C6K9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col6a6Q8C6K9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Col6a6Q8C6K9 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col6a6Q8C6K9 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col6a6Q8C6K9 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Col6a6Q8C6K9 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Col6a6Q8C6K9 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Col6a6Q8C6K9 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC24.09■■□□□ 1.45
Col6a6Q8C6K9 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col6a6Q8C6K9 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC24.07■■□□□ 1.44
Col6a6Q8C6K9 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col6a6Q8C6K9 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC24.03■■□□□ 1.44
Col6a6Q8C6K9 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.02■■□□□ 1.44
Col6a6Q8C6K9 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col6a6Q8C6K9 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
Col6a6Q8C6K9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col6a6Q8C6K9 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col6a6Q8C6K9 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col6a6Q8C6K9 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC23.94■■□□□ 1.42
Col6a6Q8C6K9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC23.93■■□□□ 1.42
Col6a6Q8C6K9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col6a6Q8C6K9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Col6a6Q8C6K9 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.9■■□□□ 1.42
Col6a6Q8C6K9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col6a6Q8C6K9 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.9■■□□□ 1.42
Col6a6Q8C6K9 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC23.88■■□□□ 1.41
Col6a6Q8C6K9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col6a6Q8C6K9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Col6a6Q8C6K9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col6a6Q8C6K9 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Col6a6Q8C6K9 Gm24970-201ENSMUST00000175582 82 ntBASIC23.8■■□□□ 1.4
Col6a6Q8C6K9 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC23.79■■□□□ 1.4
Col6a6Q8C6K9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col6a6Q8C6K9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col6a6Q8C6K9 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col6a6Q8C6K9 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC23.75■■□□□ 1.39
Col6a6Q8C6K9 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Col6a6Q8C6K9 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC23.74■■□□□ 1.39
Col6a6Q8C6K9 Gm8503-201ENSMUST00000118131 455 ntBASIC23.74■■□□□ 1.39
Col6a6Q8C6K9 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC23.71■■□□□ 1.39
Col6a6Q8C6K9 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col6a6Q8C6K9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col6a6Q8C6K9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.7■■□□□ 1.38
Col6a6Q8C6K9 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.7■■□□□ 1.38
Col6a6Q8C6K9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col6a6Q8C6K9 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.7■■□□□ 1.38
Col6a6Q8C6K9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Col6a6Q8C6K9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Col6a6Q8C6K9 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
Col6a6Q8C6K9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Col6a6Q8C6K9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Col6a6Q8C6K9 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Col6a6Q8C6K9 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Col6a6Q8C6K9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Col6a6Q8C6K9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms