Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC37.15■■■■□ 3.54
Usp40Q8BWR4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
Usp40Q8BWR4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC37.1■■■■□ 3.53
Usp40Q8BWR4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
Usp40Q8BWR4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC37.08■■■■□ 3.53
Usp40Q8BWR4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.53
Usp40Q8BWR4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
Usp40Q8BWR4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
Usp40Q8BWR4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
Usp40Q8BWR4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
Usp40Q8BWR4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
Usp40Q8BWR4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
Usp40Q8BWR4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
Usp40Q8BWR4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
Usp40Q8BWR4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC36.9■■■■□ 3.5
Usp40Q8BWR4 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC36.9■■■■□ 3.5
Usp40Q8BWR4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC36.9■■■■□ 3.5
Usp40Q8BWR4 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
Usp40Q8BWR4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC36.88■■■■□ 3.49
Usp40Q8BWR4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC36.84■■■■□ 3.49
Usp40Q8BWR4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
Usp40Q8BWR4 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.49
Usp40Q8BWR4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
Usp40Q8BWR4 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
Usp40Q8BWR4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC36.79■■■■□ 3.48
Usp40Q8BWR4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
Usp40Q8BWR4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC36.75■■■■□ 3.47
Usp40Q8BWR4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC36.7■■■■□ 3.47
Usp40Q8BWR4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC36.7■■■■□ 3.47
Usp40Q8BWR4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
Usp40Q8BWR4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
Usp40Q8BWR4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC36.63■■■■□ 3.45
Usp40Q8BWR4 Tdp2-203ENSMUST00000223804 1136 ntBASIC36.63■■■■□ 3.45
Usp40Q8BWR4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
Usp40Q8BWR4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC36.6■■■■□ 3.45
Usp40Q8BWR4 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC36.59■■■■□ 3.45
Usp40Q8BWR4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
Usp40Q8BWR4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC36.53■■■■□ 3.44
Usp40Q8BWR4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC36.51■■■■□ 3.44
Usp40Q8BWR4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC36.51■■■■□ 3.43
Usp40Q8BWR4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.43
Usp40Q8BWR4 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
Usp40Q8BWR4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC36.48■■■■□ 3.43
Usp40Q8BWR4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
Usp40Q8BWR4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC36.44■■■■□ 3.42
Usp40Q8BWR4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC36.42■■■■□ 3.42
Usp40Q8BWR4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC36.41■■■■□ 3.42
Usp40Q8BWR4 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC36.41■■■■□ 3.42
Usp40Q8BWR4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
Usp40Q8BWR4 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
Usp40Q8BWR4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
Usp40Q8BWR4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC36.38■■■■□ 3.41
Usp40Q8BWR4 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC36.37■■■■□ 3.41
Usp40Q8BWR4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
Usp40Q8BWR4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
Usp40Q8BWR4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
Usp40Q8BWR4 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC36.33■■■■□ 3.41
Usp40Q8BWR4 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC36.31■■■■□ 3.4
Usp40Q8BWR4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
Usp40Q8BWR4 Gm45855-201ENSMUST00000212546 880 ntBASIC36.28■■■■□ 3.4
Usp40Q8BWR4 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC36.27■■■■□ 3.4
Usp40Q8BWR4 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
Usp40Q8BWR4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC36.26■■■■□ 3.4
Usp40Q8BWR4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC36.24■■■■□ 3.39
Usp40Q8BWR4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC36.23■■■■□ 3.39
Usp40Q8BWR4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
Usp40Q8BWR4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC36.19■■■■□ 3.38
Usp40Q8BWR4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
Usp40Q8BWR4 Gm9397-201ENSMUST00000200125 605 ntBASIC36.17■■■■□ 3.38
Usp40Q8BWR4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
Usp40Q8BWR4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC36.14■■■■□ 3.38
Usp40Q8BWR4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
Usp40Q8BWR4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC36.13■■■■□ 3.37
Usp40Q8BWR4 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
Usp40Q8BWR4 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
Usp40Q8BWR4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC36.1■■■■□ 3.37
Usp40Q8BWR4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC36.09■■■■□ 3.37
Usp40Q8BWR4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
Usp40Q8BWR4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
Usp40Q8BWR4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC36.06■■■■□ 3.36
Usp40Q8BWR4 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
Usp40Q8BWR4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC36.06■■■■□ 3.36
Usp40Q8BWR4 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
Usp40Q8BWR4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC36.05■■■■□ 3.36
Usp40Q8BWR4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC36.05■■■■□ 3.36
Usp40Q8BWR4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC36.04■■■■□ 3.36
Usp40Q8BWR4 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC36.03■■■■□ 3.36
Usp40Q8BWR4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC36.03■■■■□ 3.36
Usp40Q8BWR4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC36.02■■■■□ 3.36
Usp40Q8BWR4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
Usp40Q8BWR4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC36.01■■■■□ 3.36
Usp40Q8BWR4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC36.01■■■■□ 3.35
Usp40Q8BWR4 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC35.99■■■■□ 3.35
Usp40Q8BWR4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC35.98■■■■□ 3.35
Usp40Q8BWR4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
Usp40Q8BWR4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC35.96■■■■□ 3.35
Usp40Q8BWR4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC35.95■■■■□ 3.35
Usp40Q8BWR4 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
Usp40Q8BWR4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
Usp40Q8BWR4 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC35.9■■■■□ 3.34
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms