Protein–RNA interactions for Protein: Q8BLX7

Col16a1, Collagen alpha-1(XVI) chain, mousemouse

Predictions only

Length 1,580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col16a1Q8BLX7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC36,23■■■■□ 3,39
Col16a1Q8BLX7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC36,2■■■■□ 3,39
Col16a1Q8BLX7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC36,19■■■■□ 3,38
Col16a1Q8BLX7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC36,19■■■■□ 3,38
Col16a1Q8BLX7 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC36,19■■■■□ 3,38
Col16a1Q8BLX7 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC36,17■■■■□ 3,38
Col16a1Q8BLX7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC36,15■■■■□ 3,38
Col16a1Q8BLX7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC36,12■■■■□ 3,37
Col16a1Q8BLX7 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC36,11■■■■□ 3,37
Col16a1Q8BLX7 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC36,1■■■■□ 3,37
Col16a1Q8BLX7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC36,09■■■■□ 3,37
Col16a1Q8BLX7 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC36,07■■■■□ 3,37
Col16a1Q8BLX7 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC36,04■■■■□ 3,36
Col16a1Q8BLX7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC36,02■■■■□ 3,36
Col16a1Q8BLX7 Mipep-204ENSMUST00000225043 1548 ntBASIC36■■■■□ 3,35
Col16a1Q8BLX7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC35,98■■■■□ 3,35
Col16a1Q8BLX7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC35,98■■■■□ 3,35
Col16a1Q8BLX7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC35,97■■■■□ 3,35
Col16a1Q8BLX7 Gm45855-201ENSMUST00000212546 880 ntBASIC35,97■■■■□ 3,35
Col16a1Q8BLX7 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC35,94■■■■□ 3,34
Col16a1Q8BLX7 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC35,9■■■■□ 3,34
Col16a1Q8BLX7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC35,88■■■■□ 3,33
Col16a1Q8BLX7 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC35,87■■■■□ 3,33
Col16a1Q8BLX7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC35,83■■■■□ 3,33
Col16a1Q8BLX7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC35,81■■■■□ 3,32
Col16a1Q8BLX7 Gm9397-201ENSMUST00000200125 605 ntBASIC35,81■■■■□ 3,32
Col16a1Q8BLX7 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC35,81■■■■□ 3,32
Col16a1Q8BLX7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC35,81■■■■□ 3,32
Col16a1Q8BLX7 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC35,79■■■■□ 3,32
Col16a1Q8BLX7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC35,76■■■■□ 3,32
Col16a1Q8BLX7 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC35,75■■■■□ 3,31
Col16a1Q8BLX7 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC35,74■■■■□ 3,31
Col16a1Q8BLX7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC35,73■■■■□ 3,31
Col16a1Q8BLX7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC35,72■■■■□ 3,31
Col16a1Q8BLX7 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC35,72■■■■□ 3,31
Col16a1Q8BLX7 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC35,7■■■■□ 3,31
Col16a1Q8BLX7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC35,7■■■■□ 3,31
Col16a1Q8BLX7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC35,69■■■■□ 3,3
Col16a1Q8BLX7 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC35,69■■■■□ 3,3
Col16a1Q8BLX7 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC35,68■■■■□ 3,3
Col16a1Q8BLX7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC35,66■■■■□ 3,3
Col16a1Q8BLX7 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC35,65■■■■□ 3,3
Col16a1Q8BLX7 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC35,64■■■■□ 3,3
Col16a1Q8BLX7 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC35,64■■■■□ 3,3
Col16a1Q8BLX7 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC35,62■■■■□ 3,29
Col16a1Q8BLX7 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC35,59■■■■□ 3,29
Col16a1Q8BLX7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC35,59■■■■□ 3,29
Col16a1Q8BLX7 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC35,58■■■■□ 3,29
Col16a1Q8BLX7 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC35,58■■■■□ 3,29
Col16a1Q8BLX7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC35,56■■■■□ 3,28
Col16a1Q8BLX7 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC35,55■■■■□ 3,28
Col16a1Q8BLX7 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC35,55■■■■□ 3,28
Col16a1Q8BLX7 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC35,54■■■■□ 3,28
Col16a1Q8BLX7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC35,53■■■■□ 3,28
Col16a1Q8BLX7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC35,53■■■■□ 3,28
Col16a1Q8BLX7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC35,5■■■■□ 3,27
Col16a1Q8BLX7 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC35,48■■■■□ 3,27
Col16a1Q8BLX7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC35,47■■■■□ 3,27
Col16a1Q8BLX7 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC35,47■■■■□ 3,27
Col16a1Q8BLX7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC35,47■■■■□ 3,27
Col16a1Q8BLX7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC35,45■■■■□ 3,27
Col16a1Q8BLX7 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC35,45■■■■□ 3,27
Col16a1Q8BLX7 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC35,44■■■■□ 3,26
Col16a1Q8BLX7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC35,43■■■■□ 3,26
Col16a1Q8BLX7 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC35,43■■■■□ 3,26
Col16a1Q8BLX7 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Col16a1Q8BLX7 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Col16a1Q8BLX7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC35,41■■■■□ 3,26
Col16a1Q8BLX7 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC35,4■■■■□ 3,26
Col16a1Q8BLX7 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC35,39■■■■□ 3,26
Col16a1Q8BLX7 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC35,38■■■■□ 3,25
Col16a1Q8BLX7 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC35,35■■■■□ 3,25
Col16a1Q8BLX7 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC35,34■■■■□ 3,25
Col16a1Q8BLX7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC35,33■■■■□ 3,25
Col16a1Q8BLX7 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC35,32■■■■□ 3,24
Col16a1Q8BLX7 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC35,29■■■■□ 3,24
Col16a1Q8BLX7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC35,29■■■■□ 3,24
Col16a1Q8BLX7 Gm5987-201ENSMUST00000196433 1151 ntBASIC35,29■■■■□ 3,24
Col16a1Q8BLX7 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC35,27■■■■□ 3,24
Col16a1Q8BLX7 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC35,25■■■■□ 3,23
Col16a1Q8BLX7 Gm24970-201ENSMUST00000175582 82 ntBASIC35,25■■■■□ 3,23
Col16a1Q8BLX7 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC35,25■■■■□ 3,23
Col16a1Q8BLX7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC35,24■■■■□ 3,23
Col16a1Q8BLX7 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC35,24■■■■□ 3,23
Col16a1Q8BLX7 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC35,2■■■■□ 3,23
Col16a1Q8BLX7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC35,19■■■■□ 3,22
Col16a1Q8BLX7 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC35,17■■■■□ 3,22
Col16a1Q8BLX7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC35,15■■■■□ 3,22
Col16a1Q8BLX7 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC35,13■■■■□ 3,22
Col16a1Q8BLX7 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC35,13■■■■□ 3,21
Col16a1Q8BLX7 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC35,1■■■■□ 3,21
Col16a1Q8BLX7 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC35,09■■■■□ 3,21
Col16a1Q8BLX7 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC35,08■■■■□ 3,21
Col16a1Q8BLX7 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC35,06■■■■□ 3,2
Col16a1Q8BLX7 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC35,03■■■■□ 3,2
Col16a1Q8BLX7 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC35,03■■■■□ 3,2
Col16a1Q8BLX7 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC34,99■■■■□ 3,19
Col16a1Q8BLX7 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC34,98■■■■□ 3,19
Col16a1Q8BLX7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC34,98■■■■□ 3,19
Col16a1Q8BLX7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC34,97■■■■□ 3,19
Retrieved 100 of 76,532 protein–RNA pairs in 47,6 ms