Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC35.09■■■■□ 3.21
Ddb1Q3U1J4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
Ddb1Q3U1J4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
Ddb1Q3U1J4 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC35.04■■■■□ 3.2
Ddb1Q3U1J4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
Ddb1Q3U1J4 Zfp131-207ENSMUST00000224946 1783 ntBASIC35.01■■■■□ 3.2
Ddb1Q3U1J4 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
Ddb1Q3U1J4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Ddb1Q3U1J4 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
Ddb1Q3U1J4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC34.89■■■■□ 3.18
Ddb1Q3U1J4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
Ddb1Q3U1J4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC34.84■■■■□ 3.17
Ddb1Q3U1J4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Ddb1Q3U1J4 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
Ddb1Q3U1J4 Gm9397-201ENSMUST00000200125 605 ntBASIC34.81■■■■□ 3.16
Ddb1Q3U1J4 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
Ddb1Q3U1J4 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
Ddb1Q3U1J4 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
Ddb1Q3U1J4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Ddb1Q3U1J4 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC34.77■■■■□ 3.16
Ddb1Q3U1J4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Ddb1Q3U1J4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC34.75■■■■□ 3.15
Ddb1Q3U1J4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC34.75■■■■□ 3.15
Ddb1Q3U1J4 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
Ddb1Q3U1J4 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
Ddb1Q3U1J4 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Ddb1Q3U1J4 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
Ddb1Q3U1J4 Mipep-204ENSMUST00000225043 1548 ntBASIC34.71■■■■□ 3.15
Ddb1Q3U1J4 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC34.7■■■■□ 3.15
Ddb1Q3U1J4 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
Ddb1Q3U1J4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC34.68■■■■□ 3.14
Ddb1Q3U1J4 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC34.67■■■■□ 3.14
Ddb1Q3U1J4 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
Ddb1Q3U1J4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC34.66■■■■□ 3.14
Ddb1Q3U1J4 Gm5987-201ENSMUST00000196433 1151 ntBASIC34.65■■■■□ 3.14
Ddb1Q3U1J4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
Ddb1Q3U1J4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
Ddb1Q3U1J4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC34.6■■■■□ 3.13
Ddb1Q3U1J4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
Ddb1Q3U1J4 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Ddb1Q3U1J4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC34.58■■■■□ 3.13
Ddb1Q3U1J4 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Ddb1Q3U1J4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
Ddb1Q3U1J4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
Ddb1Q3U1J4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
Ddb1Q3U1J4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC34.54■■■■□ 3.12
Ddb1Q3U1J4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC34.53■■■■□ 3.12
Ddb1Q3U1J4 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC34.5■■■■□ 3.11
Ddb1Q3U1J4 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC34.49■■■■□ 3.11
Ddb1Q3U1J4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC34.47■■■■□ 3.11
Ddb1Q3U1J4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
Ddb1Q3U1J4 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC34.47■■■■□ 3.11
Ddb1Q3U1J4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC34.47■■■■□ 3.11
Ddb1Q3U1J4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC34.47■■■■□ 3.11
Ddb1Q3U1J4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
Ddb1Q3U1J4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC34.41■■■■□ 3.1
Ddb1Q3U1J4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC34.41■■■■□ 3.1
Ddb1Q3U1J4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
Ddb1Q3U1J4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC34.37■■■■□ 3.09
Ddb1Q3U1J4 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
Ddb1Q3U1J4 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
Ddb1Q3U1J4 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC34.29■■■■□ 3.08
Ddb1Q3U1J4 Gm24970-201ENSMUST00000175582 82 ntBASIC34.27■■■■□ 3.08
Ddb1Q3U1J4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC34.24■■■■□ 3.07
Ddb1Q3U1J4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC34.23■■■■□ 3.07
Ddb1Q3U1J4 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC34.21■■■■□ 3.07
Ddb1Q3U1J4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
Ddb1Q3U1J4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC34.18■■■■□ 3.06
Ddb1Q3U1J4 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
Ddb1Q3U1J4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
Ddb1Q3U1J4 Gm9939-201ENSMUST00000067161 1154 ntBASIC34.11■■■■□ 3.05
Ddb1Q3U1J4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC34.1■■■■□ 3.05
Ddb1Q3U1J4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC34.09■■■■□ 3.05
Ddb1Q3U1J4 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC34.08■■■■□ 3.05
Ddb1Q3U1J4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
Ddb1Q3U1J4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC34.02■■■■□ 3.04
Ddb1Q3U1J4 Gm8503-201ENSMUST00000118131 455 ntBASIC34.01■■■■□ 3.03
Ddb1Q3U1J4 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC33.99■■■■□ 3.03
Ddb1Q3U1J4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC33.99■■■■□ 3.03
Ddb1Q3U1J4 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
Ddb1Q3U1J4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
Ddb1Q3U1J4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC33.97■■■■□ 3.03
Ddb1Q3U1J4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC33.95■■■■□ 3.03
Ddb1Q3U1J4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
Ddb1Q3U1J4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Ddb1Q3U1J4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
Ddb1Q3U1J4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
Ddb1Q3U1J4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Ddb1Q3U1J4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Ddb1Q3U1J4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Ddb1Q3U1J4 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Ddb1Q3U1J4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC33.85■■■■□ 3.01
Ddb1Q3U1J4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
Ddb1Q3U1J4 Gm6821-201ENSMUST00000107540 542 ntBASIC33.84■■■■□ 3.01
Ddb1Q3U1J4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC33.82■■■■□ 3
Ddb1Q3U1J4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Ddb1Q3U1J4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
Ddb1Q3U1J4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Ddb1Q3U1J4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Ddb1Q3U1J4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms