Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC32.23■■■□□ 2.75
Col1a1P11087 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Col1a1P11087 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Col1a1P11087 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Col1a1P11087 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC32.12■■■□□ 2.73
Col1a1P11087 Gm45855-201ENSMUST00000212546 880 ntBASIC32.1■■■□□ 2.73
Col1a1P11087 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
Col1a1P11087 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.72
Col1a1P11087 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Col1a1P11087 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC32.03■■■□□ 2.72
Col1a1P11087 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Col1a1P11087 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Col1a1P11087 Mipep-204ENSMUST00000225043 1548 ntBASIC31.97■■■□□ 2.71
Col1a1P11087 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Col1a1P11087 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col1a1P11087 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Col1a1P11087 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC31.93■■■□□ 2.7
Col1a1P11087 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
Col1a1P11087 Gm9397-201ENSMUST00000200125 605 ntBASIC31.91■■■□□ 2.7
Col1a1P11087 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Col1a1P11087 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Col1a1P11087 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Col1a1P11087 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
Col1a1P11087 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Col1a1P11087 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Col1a1P11087 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Col1a1P11087 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Col1a1P11087 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Col1a1P11087 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Col1a1P11087 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Col1a1P11087 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Col1a1P11087 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Col1a1P11087 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.79■■■□□ 2.68
Col1a1P11087 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col1a1P11087 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Col1a1P11087 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC31.77■■■□□ 2.68
Col1a1P11087 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col1a1P11087 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC31.75■■■□□ 2.67
Col1a1P11087 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col1a1P11087 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Col1a1P11087 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Col1a1P11087 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
Col1a1P11087 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
Col1a1P11087 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Col1a1P11087 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Col1a1P11087 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Col1a1P11087 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col1a1P11087 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col1a1P11087 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC31.63■■■□□ 2.65
Col1a1P11087 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC31.63■■■□□ 2.65
Col1a1P11087 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC31.61■■■□□ 2.65
Col1a1P11087 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC31.61■■■□□ 2.65
Col1a1P11087 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC31.61■■■□□ 2.65
Col1a1P11087 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC31.6■■■□□ 2.65
Col1a1P11087 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Col1a1P11087 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Col1a1P11087 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Col1a1P11087 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col1a1P11087 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col1a1P11087 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Col1a1P11087 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col1a1P11087 Gm24970-201ENSMUST00000175582 82 ntBASIC31.46■■■□□ 2.63
Col1a1P11087 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC31.46■■■□□ 2.63
Col1a1P11087 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC31.45■■■□□ 2.62
Col1a1P11087 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Col1a1P11087 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
Col1a1P11087 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col1a1P11087 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.41■■■□□ 2.62
Col1a1P11087 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC31.41■■■□□ 2.62
Col1a1P11087 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col1a1P11087 Gm5987-201ENSMUST00000196433 1151 ntBASIC31.37■■■□□ 2.61
Col1a1P11087 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC31.37■■■□□ 2.61
Col1a1P11087 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.34■■■□□ 2.61
Col1a1P11087 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col1a1P11087 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC31.32■■■□□ 2.6
Col1a1P11087 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC31.31■■■□□ 2.6
Col1a1P11087 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Col1a1P11087 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Col1a1P11087 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col1a1P11087 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col1a1P11087 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
Col1a1P11087 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
Col1a1P11087 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col1a1P11087 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC31.23■■■□□ 2.59
Col1a1P11087 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC31.21■■■□□ 2.59
Col1a1P11087 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Col1a1P11087 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Col1a1P11087 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC31.17■■■□□ 2.58
Col1a1P11087 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Col1a1P11087 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Col1a1P11087 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col1a1P11087 Gm8503-201ENSMUST00000118131 455 ntBASIC31.12■■■□□ 2.57
Col1a1P11087 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col1a1P11087 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Col1a1P11087 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Col1a1P11087 Gm9939-201ENSMUST00000067161 1154 ntBASIC31.1■■■□□ 2.57
Col1a1P11087 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Col1a1P11087 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Col1a1P11087 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Col1a1P11087 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms