Protein–RNA interactions for Protein: A0A075B648

Trav12-3, T cell receptor alpha variable 12-3 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12-3A0A075B648 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav12-3A0A075B648 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav12-3A0A075B648 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC19.11■□□□□ 0.65
Trav12-3A0A075B648 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav12-3A0A075B648 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav12-3A0A075B648 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav12-3A0A075B648 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav12-3A0A075B648 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav12-3A0A075B648 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trav12-3A0A075B648 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav12-3A0A075B648 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav12-3A0A075B648 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Trav12-3A0A075B648 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav12-3A0A075B648 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav12-3A0A075B648 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trav12-3A0A075B648 Amer2-203ENSMUST00000225247 2662 ntBASIC19.02■□□□□ 0.63
Trav12-3A0A075B648 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav12-3A0A075B648 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav12-3A0A075B648 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav12-3A0A075B648 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Trav12-3A0A075B648 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav12-3A0A075B648 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav12-3A0A075B648 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav12-3A0A075B648 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.98■□□□□ 0.63
Trav12-3A0A075B648 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav12-3A0A075B648 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav12-3A0A075B648 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav12-3A0A075B648 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.96■□□□□ 0.63
Trav12-3A0A075B648 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Trav12-3A0A075B648 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav12-3A0A075B648 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trav12-3A0A075B648 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trav12-3A0A075B648 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav12-3A0A075B648 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav12-3A0A075B648 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav12-3A0A075B648 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav12-3A0A075B648 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav12-3A0A075B648 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav12-3A0A075B648 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12-3A0A075B648 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav12-3A0A075B648 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav12-3A0A075B648 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Trav12-3A0A075B648 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Trav12-3A0A075B648 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav12-3A0A075B648 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav12-3A0A075B648 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav12-3A0A075B648 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav12-3A0A075B648 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12-3A0A075B648 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12-3A0A075B648 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav12-3A0A075B648 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trav12-3A0A075B648 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav12-3A0A075B648 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav12-3A0A075B648 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC18.83■□□□□ 0.6
Trav12-3A0A075B648 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trav12-3A0A075B648 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav12-3A0A075B648 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav12-3A0A075B648 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trav12-3A0A075B648 AC153890.1-201ENSMUST00000220021 2469 ntBASIC18.81■□□□□ 0.6
Trav12-3A0A075B648 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav12-3A0A075B648 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav12-3A0A075B648 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav12-3A0A075B648 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.79■□□□□ 0.6
Trav12-3A0A075B648 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trav12-3A0A075B648 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav12-3A0A075B648 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.77■□□□□ 0.59
Trav12-3A0A075B648 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav12-3A0A075B648 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav12-3A0A075B648 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav12-3A0A075B648 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.73■□□□□ 0.59
Trav12-3A0A075B648 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav12-3A0A075B648 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav12-3A0A075B648 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav12-3A0A075B648 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav12-3A0A075B648 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav12-3A0A075B648 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav12-3A0A075B648 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav12-3A0A075B648 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav12-3A0A075B648 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav12-3A0A075B648 Zfp131-207ENSMUST00000224946 1783 ntBASIC18.68■□□□□ 0.58
Trav12-3A0A075B648 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.68■□□□□ 0.58
Trav12-3A0A075B648 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Trav12-3A0A075B648 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trav12-3A0A075B648 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trav12-3A0A075B648 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav12-3A0A075B648 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav12-3A0A075B648 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12-3A0A075B648 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12-3A0A075B648 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12-3A0A075B648 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav12-3A0A075B648 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav12-3A0A075B648 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12-3A0A075B648 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav12-3A0A075B648 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav12-3A0A075B648 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav12-3A0A075B648 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav12-3A0A075B648 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav12-3A0A075B648 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav12-3A0A075B648 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav12-3A0A075B648 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms