Protein–RNA interactions for Protein: A0A075B625

Trav4d-3, T cell receptor alpha variable 4D-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4d-3A0A075B625 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4d-3A0A075B625 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav4d-3A0A075B625 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav4d-3A0A075B625 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav4d-3A0A075B625 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav4d-3A0A075B625 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav4d-3A0A075B625 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav4d-3A0A075B625 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav4d-3A0A075B625 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC17.59■□□□□ 0.41
Trav4d-3A0A075B625 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav4d-3A0A075B625 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav4d-3A0A075B625 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trav4d-3A0A075B625 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Trav4d-3A0A075B625 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trav4d-3A0A075B625 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4d-3A0A075B625 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4d-3A0A075B625 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
Trav4d-3A0A075B625 Zfp131-207ENSMUST00000224946 1783 ntBASIC17.56■□□□□ 0.4
Trav4d-3A0A075B625 Gm43445-201ENSMUST00000198564 2091 ntBASIC17.56■□□□□ 0.4
Trav4d-3A0A075B625 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav4d-3A0A075B625 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav4d-3A0A075B625 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav4d-3A0A075B625 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC17.54■□□□□ 0.4
Trav4d-3A0A075B625 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav4d-3A0A075B625 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trav4d-3A0A075B625 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trav4d-3A0A075B625 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav4d-3A0A075B625 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4d-3A0A075B625 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4d-3A0A075B625 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4d-3A0A075B625 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4d-3A0A075B625 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4d-3A0A075B625 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav4d-3A0A075B625 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Trav4d-3A0A075B625 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav4d-3A0A075B625 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav4d-3A0A075B625 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav4d-3A0A075B625 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav4d-3A0A075B625 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC17.44■□□□□ 0.38
Trav4d-3A0A075B625 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav4d-3A0A075B625 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Trav4d-3A0A075B625 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav4d-3A0A075B625 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav4d-3A0A075B625 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav4d-3A0A075B625 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4d-3A0A075B625 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trav4d-3A0A075B625 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav4d-3A0A075B625 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav4d-3A0A075B625 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav4d-3A0A075B625 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav4d-3A0A075B625 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trav4d-3A0A075B625 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav4d-3A0A075B625 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav4d-3A0A075B625 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav4d-3A0A075B625 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav4d-3A0A075B625 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav4d-3A0A075B625 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav4d-3A0A075B625 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav4d-3A0A075B625 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav4d-3A0A075B625 Gm27325-201ENSMUST00000175467 74 ntBASIC17.31■□□□□ 0.36
Trav4d-3A0A075B625 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav4d-3A0A075B625 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4d-3A0A075B625 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trav4d-3A0A075B625 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4d-3A0A075B625 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4d-3A0A075B625 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav4d-3A0A075B625 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Trav4d-3A0A075B625 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav4d-3A0A075B625 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav4d-3A0A075B625 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav4d-3A0A075B625 Amer2-203ENSMUST00000225247 2662 ntBASIC17.24■□□□□ 0.35
Trav4d-3A0A075B625 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trav4d-3A0A075B625 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trav4d-3A0A075B625 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav4d-3A0A075B625 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.22■□□□□ 0.35
Trav4d-3A0A075B625 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav4d-3A0A075B625 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav4d-3A0A075B625 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav4d-3A0A075B625 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav4d-3A0A075B625 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav4d-3A0A075B625 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Trav4d-3A0A075B625 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC17.21■□□□□ 0.34
Trav4d-3A0A075B625 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trav4d-3A0A075B625 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav4d-3A0A075B625 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav4d-3A0A075B625 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Trav4d-3A0A075B625 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav4d-3A0A075B625 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav4d-3A0A075B625 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4d-3A0A075B625 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4d-3A0A075B625 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4d-3A0A075B625 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4d-3A0A075B625 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4d-3A0A075B625 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav4d-3A0A075B625 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms