Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm25053-201ENSMUST00000103982 133 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm25922-201ENSMUST00000104281 130 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm25562-201ENSMUST00000104608 133 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm24679-201ENSMUST00000158762 111 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 AC238811.4-201ENSMUST00000178019 1246 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 AC238940.3-201ENSMUST00000178830 1246 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm37852-201ENSMUST00000193027 350 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm6677-201ENSMUST00000195100 441 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm25053-202ENSMUST00000199731 132 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm18514-201ENSMUST00000218980 436 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 AC158392.3-201ENSMUST00000224271 1284 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Capsl-202ENSMUST00000226688 739 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm5805-201ENSMUST00000072779 456 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Gm45675-201ENSMUST00000211202 3429 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Ttc7b-206ENSMUST00000223020 3307 ntTSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Atg9a-205ENSMUST00000188347 4041 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Lig3-210ENSMUST00000173347 3631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Upf3bQ3ULL6 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Upf3bQ3ULL6 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.55
Upf3bQ3ULL6 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Mir3547-201ENSMUST00000175461 88 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm9116-201ENSMUST00000192400 1018 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm37028-201ENSMUST00000194276 107 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm7047-201ENSMUST00000196224 1063 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm8162-201ENSMUST00000213951 665 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm42851-201ENSMUST00000201325 1411 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 AC207128.2-201ENSMUST00000223708 1924 ntBASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.58□□□□□ -0.56
Upf3bQ3ULL6 Gm38312-201ENSMUST00000195426 1746 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm37058-201ENSMUST00000193393 1644 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Prss57-201ENSMUST00000020573 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm44369-201ENSMUST00000204543 2175 ntBASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Upf3bQ3ULL6 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms