Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Col1a1P11087 Lyrm1-204ENSMUST00000106518 875 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
Col1a1P11087 Gm12047-201ENSMUST00000117561 944 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Fgf1-203ENSMUST00000117566 418 ntTSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Gm11771-201ENSMUST00000118124 732 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Smt3h2-ps2-201ENSMUST00000122370 288 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 6820431F20Rik-201ENSMUST00000150051 936 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Gm26021-201ENSMUST00000158664 131 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Tex35-206ENSMUST00000187546 856 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Gm8918-201ENSMUST00000190587 1087 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 AC156274.1-201ENSMUST00000219193 634 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 AC134860.5-201ENSMUST00000225071 1249 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Eif3m-201ENSMUST00000028592 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Gm19178-201ENSMUST00000217524 1819 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Ccm2-203ENSMUST00000109722 1760 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Gm38227-201ENSMUST00000193036 1602 ntBASIC12.55□□□□□ -0.4
Col1a1P11087 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Zfp652-201ENSMUST00000091565 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Vps45-201ENSMUST00000015891 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col1a1P11087 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.55□□□□□ -0.4
Col1a1P11087 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Cd247-202ENSMUST00000027849 1317 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm11701-201ENSMUST00000121277 1142 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Aif1l-207ENSMUST00000148056 670 ntTSL 5 BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm5627-201ENSMUST00000178539 931 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm7672-201ENSMUST00000180915 872 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Gm21083-201ENSMUST00000188807 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm6439-201ENSMUST00000199849 862 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Gm7812-201ENSMUST00000203479 874 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Gm45363-201ENSMUST00000210196 1294 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Gm46210-201ENSMUST00000218800 577 ntTSL 3 BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm36287-201ENSMUST00000223481 796 ntTSL 5 BASIC12.54□□□□□ -0.4
Col1a1P11087 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm25483-201ENSMUST00000083224 227 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Elf2-213ENSMUST00000195432 2161 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Col1a1P11087 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col1a1P11087 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm6727-201ENSMUST00000204102 1518 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Fut8-202ENSMUST00000171770 2765 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm7190-201ENSMUST00000118669 1452 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm6768-201ENSMUST00000022467 1878 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC12.54□□□□□ -0.4
Col1a1P11087 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col1a1P11087 Ap1m2-202ENSMUST00000115433 2586 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col1a1P11087 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col1a1P11087 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Defb48-201ENSMUST00000100493 445 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm13215-201ENSMUST00000117559 472 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm13191-201ENSMUST00000136489 416 ntTSL 3 BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm13898-201ENSMUST00000141865 610 ntBASIC12.53□□□□□ -0.4
Col1a1P11087 Optc-204ENSMUST00000149380 1180 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm19668-201ENSMUST00000178581 747 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col1a1P11087 D130017N08Rik-201ENSMUST00000180460 510 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col1a1P11087 Gm44017-201ENSMUST00000203231 740 ntTSL 5 BASIC12.53□□□□□ -0.4
Col1a1P11087 Prmt1-214ENSMUST00000209124 741 ntTSL 5 BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 204.7 ms