Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm8752-201ENSMUST00000173427 1694 ntBASIC14.09□□□□□ -0.15
Trim28Q62318 Plrg1-204ENSMUST00000150268 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trim28Q62318 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim28Q62318 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 Gm43375-201ENSMUST00000196705 2480 ntBASIC14.08□□□□□ -0.15
Trim28Q62318 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 Gm6783-201ENSMUST00000120916 1437 ntBASIC14.08□□□□□ -0.15
Trim28Q62318 Gm8873-201ENSMUST00000217847 1439 ntBASIC14.08□□□□□ -0.15
Trim28Q62318 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim28Q62318 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm24933-201ENSMUST00000103762 110 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Gm23252-201ENSMUST00000103776 110 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm26443-201ENSMUST00000179610 110 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm9515-201ENSMUST00000200276 647 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm7319-201ENSMUST00000210047 778 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm3318-201ENSMUST00000217604 1183 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim28Q62318 AC152169.1-201ENSMUST00000223901 701 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 CT010505.2-201ENSMUST00000227918 998 ntBASIC14.08□□□□□ -0.16
Trim28Q62318 Mptx1-201ENSMUST00000027816 799 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Tsga8-201ENSMUST00000049420 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Trim28Q62318 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Trim28Q62318 Epx-201ENSMUST00000049768 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Myc-206ENSMUST00000167731 1821 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Gm45397-201ENSMUST00000209816 1600 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim28Q62318 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim28Q62318 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim28Q62318 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm22495-201ENSMUST00000104492 126 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm11411-201ENSMUST00000117951 719 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm5395-201ENSMUST00000121650 915 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm16235-202ENSMUST00000149562 206 ntTSL 3 BASIC14.07□□□□□ -0.16
Trim28Q62318 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm42859-201ENSMUST00000199572 193 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Ascl3-201ENSMUST00000035372 700 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC14.07□□□□□ -0.16
Trim28Q62318 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm17836-201ENSMUST00000191976 1302 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 Gm43622-201ENSMUST00000200140 2019 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim28Q62318 AC154220.1-201ENSMUST00000225033 1705 ntBASIC14.07□□□□□ -0.16
Trim28Q62318 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Trim28Q62318 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Gm43625-201ENSMUST00000199177 1539 ntBASIC14.06□□□□□ -0.16
Trim28Q62318 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Trim28Q62318 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Trim28Q62318 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim28Q62318 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Trim28Q62318 Gm26637-201ENSMUST00000180880 2289 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Gm22582-201ENSMUST00000102283 94 ntBASIC14.06□□□□□ -0.16
Trim28Q62318 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Cryzl1-202ENSMUST00000114023 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim28Q62318 Gm11235-201ENSMUST00000117763 333 ntBASIC14.06□□□□□ -0.16
Trim28Q62318 Gm5510-201ENSMUST00000117826 486 ntBASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms