Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.46□□□□□ -0.57
Usp4P35123 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.46□□□□□ -0.57
Usp4P35123 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usp4P35123 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC11.46□□□□□ -0.57
Usp4P35123 Gm31941-201ENSMUST00000209689 350 ntBASIC11.46□□□□□ -0.57
Usp4P35123 AC153505.1-201ENSMUST00000218819 1071 ntBASIC11.46□□□□□ -0.57
Usp4P35123 Gm4797-201ENSMUST00000219075 1283 ntBASIC11.46□□□□□ -0.57
Usp4P35123 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.46□□□□□ -0.57
Usp4P35123 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Usp4P35123 Gm25125-201ENSMUST00000083340 136 ntBASIC11.46□□□□□ -0.57
Usp4P35123 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Usp4P35123 9130227L01Rik-202ENSMUST00000189293 1906 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Usp4P35123 Gm45675-201ENSMUST00000211202 3429 ntBASIC11.46□□□□□ -0.58
Usp4P35123 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usp4P35123 Gm44888-201ENSMUST00000209119 2541 ntBASIC11.46□□□□□ -0.58
Usp4P35123 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.58
Usp4P35123 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Usp4P35123 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC11.45□□□□□ -0.58
Usp4P35123 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Tia1-201ENSMUST00000095752 3130 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
Usp4P35123 Gm15631-201ENSMUST00000142962 2436 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Usp4P35123 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usp4P35123 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Gm16397-201ENSMUST00000122201 494 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC11.45□□□□□ -0.58
Usp4P35123 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Gm27530-201ENSMUST00000184096 98 ntBASIC11.45□□□□□ -0.58
Usp4P35123 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Gm43667-201ENSMUST00000198616 1095 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Gm45575-201ENSMUST00000210283 548 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.45□□□□□ -0.58
Usp4P35123 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.45□□□□□ -0.58
Usp4P35123 AC118639.2-201ENSMUST00000226289 223 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usp4P35123 Gm9785-201ENSMUST00000062642 1006 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Pklr-201ENSMUST00000047111 2787 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC11.45□□□□□ -0.58
Usp4P35123 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Elf5-206ENSMUST00000164172 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC11.45□□□□□ -0.58
Usp4P35123 Oprm1-230ENSMUST00000154906 2039 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Gm37447-201ENSMUST00000195625 2928 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Capn3-206ENSMUST00000110721 2898 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usp4P35123 Rims2-204ENSMUST00000226410 3685 ntBASIC11.45□□□□□ -0.58
Usp4P35123 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Gm44445-201ENSMUST00000204075 2683 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm42851-201ENSMUST00000201325 1411 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Serpina3g-201ENSMUST00000043315 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Gm42450-201ENSMUST00000199286 2644 ntTSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Usp4P35123 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC11.44□□□□□ -0.58
Usp4P35123 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm12247-201ENSMUST00000117585 670 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Gm15566-201ENSMUST00000121130 590 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Gm7666-201ENSMUST00000146631 819 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm29499-201ENSMUST00000189151 486 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Gm28329-201ENSMUST00000191208 689 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Gm29171-201ENSMUST00000191397 486 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm6108-201ENSMUST00000208365 367 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Usp4P35123 Gm2517-201ENSMUST00000215651 348 ntBASIC11.44□□□□□ -0.58
Usp4P35123 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp4P35123 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms