Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Chmp6P0C0A3 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Iqce-201ENSMUST00000041783 6037 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm13117-201ENSMUST00000120894 691 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm6407-201ENSMUST00000176468 549 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm3017-201ENSMUST00000203603 1126 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 CT009527.1-201ENSMUST00000224205 339 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 CT025553.1-201ENSMUST00000226292 299 ntBASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Dctn1-204ENSMUST00000113918 4321 ntTSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Chmp6P0C0A3 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Chmp6P0C0A3 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Chmp6P0C0A3 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Epb41l5-202ENSMUST00000052404 6442 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Inpp5b-201ENSMUST00000094782 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Peg10-201ENSMUST00000166678 6662 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Mir6998-201ENSMUST00000183343 64 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm8436-201ENSMUST00000210152 1080 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm5749-201ENSMUST00000210673 1090 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm30671-201ENSMUST00000214898 318 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm19009-201ENSMUST00000223072 823 ntBASIC11.89□□□□□ -0.51
Chmp6P0C0A3 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Chmp6P0C0A3 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms