Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Fgf14-201ENSMUST00000026631 3180 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Fut10-201ENSMUST00000066173 3183 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Zfp541-201ENSMUST00000108509 4561 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Clcn1-201ENSMUST00000031894 3545 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm11425-201ENSMUST00000119608 498 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC8.97□□□□□ -0.97
Hmgb3O54879 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm26047-201ENSMUST00000157308 113 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Man2c1-211ENSMUST00000160147 3820 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm26047-202ENSMUST00000198840 115 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC8.97□□□□□ -0.97
Hmgb3O54879 CT010486.3-201ENSMUST00000224555 811 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm9396-201ENSMUST00000076703 567 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
Hmgb3O54879 AC108416.1-201ENSMUST00000228755 1558 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Prc1-202ENSMUST00000163812 3026 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Aqp4-201ENSMUST00000079081 5082 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Hmg20a-206ENSMUST00000217518 2468 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Ttc28-201ENSMUST00000040111 10780 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gm13127-201ENSMUST00000118978 1389 ntBASIC8.97□□□□□ -0.97
Hmgb3O54879 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Rbp1-201ENSMUST00000052068 2652 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Oprm1-204ENSMUST00000063036 1427 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hmgb3O54879 Chp1-202ENSMUST00000119172 3027 ntTSL 2 BASIC8.97□□□□□ -0.97
Hmgb3O54879 Ndufb2-205ENSMUST00000135671 4371 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Dock9-206ENSMUST00000212181 7368 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Hmgcr-201ENSMUST00000022176 4425 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Zkscan1-203ENSMUST00000110962 4843 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 C78859-201ENSMUST00000212800 5943 ntBASIC8.96□□□□□ -0.97
Hmgb3O54879 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Map2-204ENSMUST00000114013 6258 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Exoc7-203ENSMUST00000106413 3298 ntAPPRIS ALT1 TSL 5 BASIC8.96□□□□□ -0.97
Hmgb3O54879 Exoc7-201ENSMUST00000021147 3337 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Uroc1-201ENSMUST00000046128 3370 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hmgb3O54879 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Rps24-210ENSMUST00000225023 1613 ntAPPRIS P4 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm5187-201ENSMUST00000117317 991 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm11509-201ENSMUST00000117358 325 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm14109-201ENSMUST00000118814 309 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm15617-201ENSMUST00000118973 771 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm32999-201ENSMUST00000192693 562 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm32111-201ENSMUST00000207689 846 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm4157-201ENSMUST00000211647 679 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm4978-201ENSMUST00000071565 801 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Zfp407-202ENSMUST00000125763 7906 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Oprm1-212ENSMUST00000105603 2053 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm28424-201ENSMUST00000187393 1319 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Stra6-213ENSMUST00000167479 2871 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 AC122367.1-201ENSMUST00000221978 1709 ntBASIC8.96□□□□□ -0.98
Hmgb3O54879 Oas1h-201ENSMUST00000072476 1703 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Cyld-201ENSMUST00000043526 8022 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Stx16-201ENSMUST00000044638 3731 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gm26797-202ENSMUST00000213132 2562 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Cap1-201ENSMUST00000069533 2620 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Hsdl1-204ENSMUST00000212517 2215 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Scn2b-202ENSMUST00000170998 4656 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC8.96□□□□□ -0.98
Hmgb3O54879 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hmgb3O54879 Eif2ak4-205ENSMUST00000110872 4907 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Cyp4x1-202ENSMUST00000106545 4187 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hmgb3O54879 Ppp6r2-201ENSMUST00000088788 2887 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms