Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim3Q9R1R2 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim3Q9R1R2 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
Trim3Q9R1R2 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim3Q9R1R2 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim3Q9R1R2 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim3Q9R1R2 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.78■□□□□ 0.6
Trim3Q9R1R2 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Gm12922-201ENSMUST00000120626 809 ntBASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim3Q9R1R2 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim3Q9R1R2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim3Q9R1R2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim3Q9R1R2 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Gm9847-201ENSMUST00000052528 599 ntBASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim3Q9R1R2 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Iqck-206ENSMUST00000208658 2891 ntBASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim3Q9R1R2 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim3Q9R1R2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms