Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col13a1Q9R1N9 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.08■□□□□ 0.32
Col13a1Q9R1N9 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col13a1Q9R1N9 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col13a1Q9R1N9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col13a1Q9R1N9 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col13a1Q9R1N9 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col13a1Q9R1N9 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Gm10033-202ENSMUST00000211874 928 ntBASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.04■□□□□ 0.32
Col13a1Q9R1N9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC17.03■□□□□ 0.32
Col13a1Q9R1N9 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Gm42778-201ENSMUST00000199644 553 ntBASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col13a1Q9R1N9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Col13a1Q9R1N9 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
Col13a1Q9R1N9 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col13a1Q9R1N9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col13a1Q9R1N9 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Gm32051-202ENSMUST00000197905 2385 ntBASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col13a1Q9R1N9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col13a1Q9R1N9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms