Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim39Q9ESN2 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Gm15546-201ENSMUST00000122095 826 ntBASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim39Q9ESN2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim39Q9ESN2 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim39Q9ESN2 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim39Q9ESN2 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim39Q9ESN2 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim39Q9ESN2 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.58■□□□□ 0.57
Trim39Q9ESN2 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim39Q9ESN2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim39Q9ESN2 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Gm42501-201ENSMUST00000200220 1026 ntBASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim39Q9ESN2 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim39Q9ESN2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Gm40881-201ENSMUST00000223397 166 ntBASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim39Q9ESN2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim39Q9ESN2 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim39Q9ESN2 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trim39Q9ESN2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim39Q9ESN2 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms