Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trim56Q80VI1 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim56Q80VI1 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Trim56Q80VI1 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim56Q80VI1 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim56Q80VI1 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Trim56Q80VI1 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim56Q80VI1 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim56Q80VI1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim56Q80VI1 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Gm27045-201ENSMUST00000182145 1402 ntBASIC23.85■■□□□ 1.41
Trim56Q80VI1 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Trim56Q80VI1 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim56Q80VI1 Gm37035-201ENSMUST00000194809 2148 ntBASIC23.84■■□□□ 1.41
Trim56Q80VI1 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trim56Q80VI1 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim56Q80VI1 Gm12251-201ENSMUST00000117893 792 ntBASIC23.84■■□□□ 1.41
Trim56Q80VI1 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Trim56Q80VI1 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim56Q80VI1 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim56Q80VI1 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim56Q80VI1 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim56Q80VI1 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC23.83■■□□□ 1.4
Trim56Q80VI1 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trim56Q80VI1 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim56Q80VI1 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim56Q80VI1 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim56Q80VI1 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Trim56Q80VI1 Mir6236-201ENSMUST00000184437 123 ntBASIC23.81■■□□□ 1.4
Trim56Q80VI1 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim56Q80VI1 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Trim56Q80VI1 AC152827.1-201ENSMUST00000221143 2189 ntBASIC23.79■■□□□ 1.4
Trim56Q80VI1 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Gm5576-201ENSMUST00000075809 1236 ntBASIC23.79■■□□□ 1.4
Trim56Q80VI1 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim56Q80VI1 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Mir7075-201ENSMUST00000184187 82 ntBASIC23.78■■□□□ 1.4
Trim56Q80VI1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim56Q80VI1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Gm6085-201ENSMUST00000182774 1470 ntBASIC23.77■■□□□ 1.4
Trim56Q80VI1 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Trim56Q80VI1 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Trim56Q80VI1 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms