Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Nr1h4Q60641 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nr1h4Q60641 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nr1h4Q60641 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.12■□□□□ 0.65
Nr1h4Q60641 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nr1h4Q60641 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nr1h4Q60641 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.1■□□□□ 0.65
Nr1h4Q60641 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nr1h4Q60641 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Nr1h4Q60641 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nr1h4Q60641 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Nr1h4Q60641 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nr1h4Q60641 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.08■□□□□ 0.64
Nr1h4Q60641 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nr1h4Q60641 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.06■□□□□ 0.64
Nr1h4Q60641 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.06■□□□□ 0.64
Nr1h4Q60641 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Nr1h4Q60641 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nr1h4Q60641 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Nr1h4Q60641 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms