Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Gm9939-201ENSMUST00000067161 1154 ntBASIC20.78■□□□□ 0.92
Rnf40Q3U319 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf40Q3U319 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf40Q3U319 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf40Q3U319 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.77■□□□□ 0.91
Rnf40Q3U319 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Rnf40Q3U319 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Rnf40Q3U319 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.76■□□□□ 0.91
Rnf40Q3U319 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf40Q3U319 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf40Q3U319 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf40Q3U319 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf40Q3U319 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Gm6821-201ENSMUST00000107540 542 ntBASIC20.75■□□□□ 0.91
Rnf40Q3U319 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.75■□□□□ 0.91
Rnf40Q3U319 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf40Q3U319 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf40Q3U319 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
Rnf40Q3U319 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf40Q3U319 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.73■□□□□ 0.91
Rnf40Q3U319 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf40Q3U319 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf40Q3U319 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.71■□□□□ 0.91
Rnf40Q3U319 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Rnf40Q3U319 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Rnf40Q3U319 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Rnf40Q3U319 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.7■□□□□ 0.9
Rnf40Q3U319 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf40Q3U319 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf40Q3U319 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.7■□□□□ 0.9
Rnf40Q3U319 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Rnf40Q3U319 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.69■□□□□ 0.9
Rnf40Q3U319 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Rnf40Q3U319 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf40Q3U319 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms