Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Shox2P70390 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shox2P70390 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC19.98■□□□□ 0.79
Shox2P70390 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.98■□□□□ 0.79
Shox2P70390 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shox2P70390 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shox2P70390 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.98■□□□□ 0.79
Shox2P70390 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shox2P70390 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Shox2P70390 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Shox2P70390 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
Shox2P70390 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shox2P70390 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
Shox2P70390 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Shox2P70390 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shox2P70390 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Shox2P70390 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Shox2P70390 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC19.94■□□□□ 0.78
Shox2P70390 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Shox2P70390 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Shox2P70390 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Shox2P70390 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Shox2P70390 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
Shox2P70390 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.93■□□□□ 0.78
Shox2P70390 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Shox2P70390 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC19.93■□□□□ 0.78
Shox2P70390 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Shox2P70390 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shox2P70390 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Shox2P70390 AC167019.3-201ENSMUST00000228225 1266 ntBASIC19.92■□□□□ 0.78
Shox2P70390 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.92■□□□□ 0.78
Shox2P70390 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Shox2P70390 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Shox2P70390 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shox2P70390 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.91■□□□□ 0.78
Shox2P70390 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.91■□□□□ 0.78
Shox2P70390 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Shox2P70390 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shox2P70390 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.9■□□□□ 0.78
Shox2P70390 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shox2P70390 Gm8503-201ENSMUST00000118131 455 ntBASIC19.9■□□□□ 0.78
Shox2P70390 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shox2P70390 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shox2P70390 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shox2P70390 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Shox2P70390 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
Shox2P70390 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shox2P70390 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shox2P70390 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shox2P70390 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shox2P70390 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.89■□□□□ 0.77
Shox2P70390 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Shox2P70390 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shox2P70390 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Shox2P70390 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.88■□□□□ 0.77
Shox2P70390 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms