Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdh1F7BJK1 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Pcdh1F7BJK1 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pcdh1F7BJK1 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Pcdh1F7BJK1 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Pcdh1F7BJK1 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Pcdh1F7BJK1 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdh1F7BJK1 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdh1F7BJK1 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdh1F7BJK1 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdh1F7BJK1 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdh1F7BJK1 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdh1F7BJK1 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdh1F7BJK1 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdh1F7BJK1 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdh1F7BJK1 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms