Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 CT009713.8-202ENSMUST00000224732 385 ntBASIC13.12□□□□□ -0.31
Rfx1P48377 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Rfx1P48377 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Gm43152-201ENSMUST00000202495 1638 ntBASIC13.12□□□□□ -0.31
Rfx1P48377 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Pklr-201ENSMUST00000047111 2787 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Pold1-201ENSMUST00000049343 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Trpc6-202ENSMUST00000214596 2913 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Vwce-201ENSMUST00000055115 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Rfx1P48377 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Rfx1P48377 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC13.11□□□□□ -0.31
Rfx1P48377 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Gm37264-201ENSMUST00000194916 2192 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Slc35c1-201ENSMUST00000067631 3139 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Card14-202ENSMUST00000106250 4206 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Gm14592-201ENSMUST00000117201 560 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Gm12218-201ENSMUST00000117666 399 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Gm14130-201ENSMUST00000118417 987 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Gm7584-201ENSMUST00000175829 940 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Gm5733-201ENSMUST00000190232 939 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC13.11□□□□□ -0.31
Rfx1P48377 AC154319.1-201ENSMUST00000216330 312 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 CT010431.1-201ENSMUST00000221249 1080 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Rfx1P48377 AL589735.1-201ENSMUST00000224353 270 ntBASIC13.11□□□□□ -0.31
Rfx1P48377 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Rfx1P48377 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Nudcd1-201ENSMUST00000038719 2600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 2810006K23Rik-201ENSMUST00000077376 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Gtf2i-222ENSMUST00000174354 4084 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Rfx1P48377 Mypn-201ENSMUST00000095580 5246 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Mkl1-204ENSMUST00000134469 4392 ntTSL 5 BASIC13.11□□□□□ -0.31
Rfx1P48377 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Rfx1P48377 Ube2l3-201ENSMUST00000090192 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Prc1-202ENSMUST00000163812 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Actn2-201ENSMUST00000064204 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Rnpc3-201ENSMUST00000092154 3888 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 Gm15566-201ENSMUST00000121130 590 ntBASIC13.1□□□□□ -0.31
Rfx1P48377 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Rfx1P48377 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Gm4482-201ENSMUST00000200876 742 ntBASIC13.1□□□□□ -0.31
Rfx1P48377 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.1□□□□□ -0.31
Rfx1P48377 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.1□□□□□ -0.31
Rfx1P48377 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Gm9785-201ENSMUST00000062642 1006 ntBASIC13.1□□□□□ -0.31
Rfx1P48377 Mical1-201ENSMUST00000019967 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC13.1□□□□□ -0.31
Rfx1P48377 Zfp804b-202ENSMUST00000200317 4430 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Rfx1P48377 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Rfx1P48377 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Echdc1-201ENSMUST00000020034 3856 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Rfx1P48377 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
Rfx1P48377 Rad51c-202ENSMUST00000067692 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Sgcz-201ENSMUST00000118896 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Rfx1P48377 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms