Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Cdc40Q9DC48 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Zfp827-203ENSMUST00000119254 4549 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm14807-201ENSMUST00000116640 983 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm13422-201ENSMUST00000118834 504 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm14219-201ENSMUST00000120414 288 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm12030-201ENSMUST00000121917 223 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm45758-201ENSMUST00000212448 1006 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm5468-202ENSMUST00000227851 682 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Gm7642-201ENSMUST00000216345 1809 ntBASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdc40Q9DC48 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Rtn3-204ENSMUST00000088171 4973 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Cdc40Q9DC48 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm7593-201ENSMUST00000187246 644 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm33366-201ENSMUST00000195583 3827 ntBASIC10.27□□□□□ -0.77
Cdc40Q9DC48 Gm42816-201ENSMUST00000198433 325 ntBASIC10.27□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms