Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Ankrd11-201ENSMUST00000098333 7995 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Pard3-201ENSMUST00000026921 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Eef2k-204ENSMUST00000106489 3047 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Lig3-212ENSMUST00000173727 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Col4a6-201ENSMUST00000101205 6648 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Exo1-201ENSMUST00000039725 7796 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Fgfr1-213ENSMUST00000167764 2915 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29125-201ENSMUST00000187121 3220 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm8146-201ENSMUST00000192106 1847 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC8.97□□□□□ -0.97
Cdx1P18111 Btk-202ENSMUST00000113213 2121 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm14644-201ENSMUST00000116671 647 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12616-201ENSMUST00000118594 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm13315-201ENSMUST00000120376 991 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm22334-201ENSMUST00000158070 133 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12624-201ENSMUST00000177615 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12621-201ENSMUST00000177760 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12615-201ENSMUST00000177970 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12622-201ENSMUST00000177975 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12627-201ENSMUST00000178412 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12625-201ENSMUST00000179122 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12614-201ENSMUST00000179586 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm12613-201ENSMUST00000180323 382 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29615-201ENSMUST00000185371 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28224-201ENSMUST00000186078 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29001-201ENSMUST00000186177 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28292-201ENSMUST00000186593 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28101-201ENSMUST00000187608 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29076-201ENSMUST00000187689 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28302-201ENSMUST00000187931 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28646-201ENSMUST00000188220 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm9230-201ENSMUST00000188228 532 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28205-201ENSMUST00000189177 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm29032-201ENSMUST00000189797 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm28695-201ENSMUST00000190300 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm37448-201ENSMUST00000192795 697 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm9136-201ENSMUST00000193368 454 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Gm45224-201ENSMUST00000208203 414 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 AC131330.1-201ENSMUST00000227814 1015 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Rorc-201ENSMUST00000029795 2136 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Mov10-203ENSMUST00000106775 3584 ntTSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Mov10-206ENSMUST00000166979 3584 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC8.97□□□□□ -0.97
Cdx1P18111 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
Cdx1P18111 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm37608-201ENSMUST00000195696 1880 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm37264-201ENSMUST00000194916 2192 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Cd160-203ENSMUST00000165991 2458 ntAPPRIS ALT2 TSL 3 BASIC8.97□□□□□ -0.97
Cdx1P18111 Anxa11os-201ENSMUST00000184083 2479 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Gm43633-201ENSMUST00000202455 2330 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC8.97□□□□□ -0.97
Cdx1P18111 Actn2-201ENSMUST00000064204 3013 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Cdx1P18111 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC8.96□□□□□ -0.97
Cdx1P18111 Slc16a5-202ENSMUST00000106532 2062 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
Cdx1P18111 Gm38005-201ENSMUST00000194845 2745 ntBASIC8.96□□□□□ -0.97
Cdx1P18111 Suclg2-204ENSMUST00000204224 3367 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
Cdx1P18111 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Gp1ba-202ENSMUST00000108551 2480 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
Cdx1P18111 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC8.96□□□□□ -0.97
Cdx1P18111 Prr30-201ENSMUST00000057718 1862 ntAPPRIS P1 TSL 3 BASIC8.96□□□□□ -0.97
Cdx1P18111 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Mtfr1-204ENSMUST00000130645 2953 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Cdx1P18111 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms