Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm2260-201ENSMUST00000184965 657 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm38228-201ENSMUST00000193169 1293 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm38319-201ENSMUST00000194537 1266 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm43066-201ENSMUST00000199589 1260 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Rps4l-202ENSMUST00000204242 789 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm45186-201ENSMUST00000206874 478 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm18212-201ENSMUST00000211678 889 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm270-201ENSMUST00000223010 976 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm807-202ENSMUST00000224929 408 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm5941-201ENSMUST00000096371 560 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Gm43435-201ENSMUST00000199996 1438 ntBASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
Trim39Q9ESN2 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ipo7-201ENSMUST00000084731 4763 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Lig4-201ENSMUST00000095476 5028 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Olfr71-203ENSMUST00000217544 2707 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm23596-201ENSMUST00000104304 132 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm14277-201ENSMUST00000121195 360 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm11960-201ENSMUST00000122068 925 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm16337-201ENSMUST00000160368 917 ntTSL 3 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ccl2-201ENSMUST00000000193 813 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gm18165-201ENSMUST00000217426 928 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Olfr845-201ENSMUST00000071259 942 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ppp4r1l-ps-202ENSMUST00000132669 2767 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Zfp141-203ENSMUST00000174407 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 AC154186.1-201ENSMUST00000227711 1597 ntBASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Cnbd1-201ENSMUST00000137780 1331 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Mfap3l-204ENSMUST00000161702 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC10.56□□□□□ -0.72
Trim39Q9ESN2 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms