Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim28Q62318 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim28Q62318 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC14.4□□□□□ -0.11
Trim28Q62318 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim28Q62318 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim28Q62318 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim28Q62318 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim28Q62318 Gm20392-201ENSMUST00000173047 701 ntBASIC14.39□□□□□ -0.11
Trim28Q62318 Gm37723-201ENSMUST00000194480 565 ntBASIC14.39□□□□□ -0.11
Trim28Q62318 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC14.39□□□□□ -0.11
Trim28Q62318 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim28Q62318 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim28Q62318 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC14.39□□□□□ -0.11
Trim28Q62318 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim28Q62318 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Gm29358-202ENSMUST00000187941 3227 ntBASIC14.39□□□□□ -0.11
Trim28Q62318 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim28Q62318 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Trim28Q62318 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gm12912-201ENSMUST00000121596 1381 ntBASIC14.38□□□□□ -0.11
Trim28Q62318 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Uba52-ps-201ENSMUST00000183770 379 ntBASIC14.38□□□□□ -0.11
Trim28Q62318 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gm43460-201ENSMUST00000202491 1057 ntBASIC14.38□□□□□ -0.11
Trim28Q62318 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Trim28Q62318 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Trim28Q62318 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Trim28Q62318 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Gm45677-201ENSMUST00000209975 1341 ntBASIC14.38□□□□□ -0.11
Trim28Q62318 Gm38312-201ENSMUST00000195426 1746 ntBASIC14.38□□□□□ -0.11
Trim28Q62318 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim28Q62318 Rubie-203ENSMUST00000227803 2430 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 AC022682.1-201ENSMUST00000224624 2023 ntBASIC14.37□□□□□ -0.11
Trim28Q62318 Gm7168-201ENSMUST00000088809 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.37□□□□□ -0.11
Trim28Q62318 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Trim28Q62318 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trim28Q62318 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
Trim28Q62318 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms