Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Mir7076-201ENSMUST00000183519 74 ntBASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm43163-201ENSMUST00000196571 442 ntBASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm44126-201ENSMUST00000204831 514 ntBASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Upf3bQ3ULL6 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm17877-201ENSMUST00000192578 814 ntBASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm10109-202ENSMUST00000206890 1211 ntBASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Katnal2-205ENSMUST00000126153 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
Upf3bQ3ULL6 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 BC043934-202ENSMUST00000185694 2356 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.92□□□□□ -0.5
Upf3bQ3ULL6 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 80.4 ms