Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm8968-201ENSMUST00000199133 1303 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm15031-201ENSMUST00000121341 210 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col1a1P11087 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC12.95□□□□□ -0.34
Col1a1P11087 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm9574-201ENSMUST00000173127 845 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm18164-201ENSMUST00000213769 927 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Gm18166-201ENSMUST00000215557 927 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Hamp2-203ENSMUST00000217812 437 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm8730-201ENSMUST00000076373 954 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col1a1P11087 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col1a1P11087 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.95□□□□□ -0.34
Col1a1P11087 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Col1a1P11087 Rbm8a-201ENSMUST00000048915 2608 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC12.94□□□□□ -0.34
Col1a1P11087 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC12.94□□□□□ -0.34
Col1a1P11087 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Col1a1P11087 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Gm11540-201ENSMUST00000117457 780 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 1700026J14Rik-201ENSMUST00000180937 794 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Gm7833-201ENSMUST00000183288 990 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Gm28032-201ENSMUST00000184104 96 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Gm42687-201ENSMUST00000199075 164 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Gm5311-201ENSMUST00000203518 709 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Saa-ps-201ENSMUST00000211148 320 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Gm4778-201ENSMUST00000098878 1098 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.94□□□□□ -0.34
Col1a1P11087 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Col1a1P11087 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Klk1b26-201ENSMUST00000048945 1386 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Col1a1P11087 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Dync2li1-201ENSMUST00000025101 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm12736-201ENSMUST00000119330 236 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Gm14148-201ENSMUST00000122433 1008 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Rab26-204ENSMUST00000176533 965 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC12.93□□□□□ -0.34
Col1a1P11087 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm3289-201ENSMUST00000200819 756 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm44540-201ENSMUST00000205640 354 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Mrps18b-201ENSMUST00000025305 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm9701-201ENSMUST00000077976 427 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Atf7-201ENSMUST00000096143 390 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.93□□□□□ -0.34
Col1a1P11087 Agbl4-202ENSMUST00000097920 1798 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col1a1P11087 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col1a1P11087 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 149.9 ms